Pelodictyon phaeoclathratiforme: Ppha_2108
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Entry
Ppha_2108 CDS
T00731
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pph
Pelodictyon phaeoclathratiforme
Pathway
pph03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pph00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Ppha_2108
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pph03019
]
Ppha_2108
Enzymes [BR:
pph01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Ppha_2108
Messenger RNA biogenesis [BR:
pph03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Ppha_2108
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
EB1
AAA_19
P-loop_SecA
Cas3-like_C_2
UvrD-helicase
Motif
Other DBs
NCBI-ProteinID:
ACF44315
UniProt:
B4SD56
LinkDB
All DBs
Position
complement(2192424..2193680)
Genome browser
AA seq
418 aa
AA seq
DB search
MEFKSLEIIDPILQALQEEGYTTPTPIQAEAIPIILQGTDLLGCAQTGTGKTAAFAIPIL
QLLSENKVYDKKRKIRTLIVTPTRELAIQIGESFNAYGRHTGLTNTVIFGGVNQNPQTAA
LIRGVDIVIATPGRLLDLLNQGFLSLRHVEILVLDEADRMLDMGFIHDIKKILAVVPKQK
QSLFFSATMPAEIVKLAATILHNPSKVSVTPVSSTVEIINQSIYFVDKGNKNSLLVDILR
DQAIKTALVFTRTKHGADKVVKILEKHNIKAEAIHGNKAQNARQRALFNFKAQTTRVLVA
TDIAARGIDVDDLEYVINFEMPNIAETYVHRIGRTGRAGAKGTALSFCDAEEKEYLRDIE
KLIAKKIPVIDDHSFPLMDHNPVKAPKQQGRGNSGHPAPKPLAKSASKRWSEKPRNGR
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atggaattcaagtcattagagatcattgatccaatcttgcaggcattacaggaagagggg
tatacgactccgactccgatacaggcagaagctataccgattattttacaaggcacagac
ttgctcggatgtgcgcagacaggaaccggaaaaacggctgcttttgccattcctatcctg
caattactgagcgaaaacaaggtttatgataaaaaacgaaaaattcggacgctgattgtt
actccgacaagggagctcgctattcagatcggagagagcttcaacgcctatggccgacat
actgggttgaccaatacggtgatttttggtggtgttaaccagaacccgcaaacggctgca
ttgatacggggtgttgatatcgtgattgctacaccagggcgactgctcgatctcctcaac
cagggctttttgagtttgcgtcatgtggagatacttgtgcttgacgaagccgatcgtatg
ctcgacatgggttttatccatgatattaaaaaaatcttggccgtggttccgaaacagaag
cagtcactcttcttttctgctacgatgccggctgaaattgtcaagcttgccgcaacgatt
ttgcataacccttcgaaggtttcggtgacgccggtttcgtcaacggtcgagattatcaat
caatcgatctactttgtcgataaaggaaataaaaacagcctgctggtcgatattttgcgg
gatcaggcgatcaaaacggcgctggtttttacgcgcacaaagcatggagccgataaagtt
gtgaaaatcctcgagaagcataacatcaaggcagaggcgatccatggcaacaaggctcaa
aatgcccgtcagcgggcgctcttcaatttcaaggcacaaacgacgcgcgttctggtggcc
acagacattgctgcccgtggtattgatgttgatgatctggagtatgtaatcaattttgaa
atgcccaatattgccgaaacatacgtccatcgtatcggacgaacgggccgggccggggca
aaaggaactgcattgtccttctgtgatgctgaagagaaagagtacctccgtgatattgaa
aagctgatagccaaaaaaattcctgtcattgacgaccactcattcccgttgatggatcac
aatcctgtcaaagcgcccaaacagcagggaagaggaaattcaggtcatcctgcaccgaaa
cccctcgcaaaaagcgcctccaaaaggtggtcagaaaagccccgaaacgggcgatag
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