Pelodictyon phaeoclathratiforme: Ppha_2380
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Entry
Ppha_2380 CDS
T00731
Name
(GenBank) RNA polymerase, sigma 32 subunit, RpoH
KO
K03086
RNA polymerase primary sigma factor
Organism
pph
Pelodictyon phaeoclathratiforme
Pathway
pph02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pph00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Ppha_2380
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pph03021
]
Ppha_2380
Transcription machinery [BR:
pph03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Ppha_2380
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r3
Sigma70_r1_2
ADH_zinc_N_2
Motif
Other DBs
NCBI-ProteinID:
ACF44571
UniProt:
B4SEP5
LinkDB
All DBs
Position
complement(2464110..2465009)
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AA seq
299 aa
AA seq
DB search
MRQLKISKQITNRESLSLDRYLQEIGKYDLLTAEDEVKLTKAIKEGFDMPVDTTEYKRAK
RALDKLIKGNLRFVVSVAKQYQNQGLTLGDLINEGNLGLIKAAKRFDETRGFKFISYAVW
WIRQSILQALAEQSRIVRLPLNRVGTLNKISKAYSQLEQEFERDPNTRELATLLEMDSQD
VADTLKIAGRHVSVDAPFAQGDDNRLLDVLQNDGHLPDYGLNRDSLTLEVERSLSVLAPR
EADVIKSYFGIGMDNPLTLEEIGEKFRLTRERVRQIKEKAIRRLRQSAYSKILKEYIGS
NT seq
900 nt
NT seq
+upstream
nt +downstream
nt
atgaggcaactcaaaataagcaaacagataaccaatcgagagagtctctcgcttgaccgt
tacctgcaggagataggaaaatatgacctgttgacagccgaagatgaggtcaaactgacg
aaggcgatcaaggagggttttgatatgcctgtcgatacgaccgaatacaagagggcgaaa
cgcgctctcgacaagctgatcaagggtaacctgcgctttgttgtttctgtcgccaaacag
tatcagaatcaggggttaaccctcggagacctgatcaatgaagggaatcttggtcttatc
aaggccgcaaagcgctttgatgaaacccgtggcttcaagtttatctcctatgccgtatgg
tggatccgccagtccattctccaggctctggccgaacagtcacgaattgtaaggcttccc
ctgaaccgggtaggaacgctcaacaaaatcagcaaggcatacagccagctcgaacaggaa
tttgaacgcgaccccaacaccagggagcttgccaccctgcttgaaatggattcgcaggac
gttgccgataccctgaaaattgcaggacgtcatgtttccgtcgatgccccgtttgcacag
ggtgatgataaccgactgctcgatgtgttgcagaacgacggccatctgcccgattacggc
ctgaaccgcgactcacttacccttgaggtcgagcgctctctctccgtccttgctccaaga
gaagccgatgtcatcaagtcctactttgggattggcatggataaccccctcaccctcgaa
gagatcggcgaaaagttccgtcttacccgtgaacgcgttcgccagatcaaggagaaggca
atccgcaggctccgccagtcggcatacagcaagattctgaaggagtacattggaagctga
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