Pelodictyon phaeoclathratiforme: Ppha_2413
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Entry
Ppha_2413 CDS
T00731
Name
(GenBank) exodeoxyribonuclease VII, large subunit
KO
K03601
exodeoxyribonuclease VII large subunit [EC:
3.1.11.6
]
Organism
pph
Pelodictyon phaeoclathratiforme
Pathway
pph03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pph00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
Ppha_2413
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pph03400
]
Ppha_2413
Enzymes [BR:
pph01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.6 exodeoxyribonuclease VII
Ppha_2413
DNA repair and recombination proteins [BR:
pph03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
Ppha_2413
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_VII_L
tRNA_anti_2
tRNA_anti-codon
RecJ_OB
tRNA-synt_2c
DUF5982
Motif
Other DBs
NCBI-ProteinID:
ACF44601
UniProt:
B4SES5
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All DBs
Position
2496658..2497866
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AA seq
402 aa
AA seq
DB search
MSAEILSVSELTQQIKTRLETHFPQVRLKGEISNCKRHGSGHIYLTLKDEGAQIPAVVWK
TTASRMAVALKDGMDVIAEGRLEVYPPSGRYQLICTSVTEAGQGALQQAFAELLQKLAKA
GYFNAERKRAIPAIPEIIGLITSSTGAVIEDMSKVFERRFPAAQLLLYPVKVQGNSAAEE
VAAAIAWFNSTKKRAHRPDIIIIARGGGSLEDLQAFNGEIVANALYNSKIPVISAIGHET
DLTIADMVADLRAGTPSIAAELAVPDRQELLRHISNLQSRQDRLLQAKLEGTERQLSSIC
SSYAFNRPPLQMLQFHERLDSLVSQMSRAITNLFSQRVQHYAAVKQQLNTLDYRKTLERG
YVLVKKEGKFMTGSQKLKASDNVELLFHDGMLPAVISPAKSS
NT seq
1209 nt
NT seq
+upstream
nt +downstream
nt
atgagtgcagagattctttcggtcagtgaactgacgcaacagatcaaaacaaggcttgaa
actcattttccacaggtcagactcaagggagagatctccaactgcaagcgacatggttcg
ggccacatctatctgacactgaaagatgagggggcccagattccggcagttgtctggaaa
acgactgccagccgcatggcggttgcactgaaggatggcatggacgttattgccgaaggg
cgtcttgaggtctatcccccatcaggccgctatcagctcatctgtacctcagtcactgaa
gcaggtcagggcgccctgcagcaggcttttgccgagcttctgcagaaacttgcaaaagca
ggttatttcaatgctgaaagaaaaagagcaattccggccatcccggaaatcatcggcctc
atcacctcatctacaggagcagtaatcgaagatatgagcaaggtgttcgagcgcagattc
ccggcggcacaactccttctctatccggtcaaggtgcagggcaacagtgcagcggaagag
gttgctgccgcaatagcctggttcaacagcacaaaaaaaagagcgcaccgacctgatatc
atcattattgcaagaggcggcggttcactggaggatctgcaggccttcaatggagagatt
gttgccaatgccctctataactcgaaaatcccggtcatcagcgccatcggccacgaaacc
gatctgaccattgccgacatggtagccgacctgcgggccggaacgccctccattgccgcc
gaacttgccgtccccgacaggcaggagctgctccgccatatcagcaatctccagtcgcga
caggatcggctcctgcaggcaaagcttgaaggcacagaacgtcagctctcttcaatctgc
agcagttacgccttcaaccggccacctcttcagatgttgcagtttcatgagcggctcgac
tcgctcgtcagccagatgtcacgagccatcaccaacctcttcagccagcgggtacagcac
tacgccgcagtcaaacagcagttgaacacgcttgattaccgtaaaacccttgaacgggga
tatgtgcttgtcaaaaaagaggggaaattcatgactggttcgcagaaactaaaagcttcc
gacaacgtggagctgctgtttcatgacggaatgctgccagcagtgatcagcccggcaaag
agctcctga
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