Halopseudomonas phragmitis: BVH74_05550
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Entry
BVH74_05550 CDS
T07765
Name
(GenBank) DNA-formamidopyrimidine glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
ppha
Halopseudomonas phragmitis
Pathway
ppha03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ppha00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
BVH74_05550
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppha03400
]
BVH74_05550
Enzymes [BR:
ppha01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
BVH74_05550
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
BVH74_05550
DNA repair and recombination proteins [BR:
ppha03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
BVH74_05550
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
zf-dskA_traR
Motif
Other DBs
NCBI-ProteinID:
AQZ94250
UniProt:
A0A1V0B2Y3
LinkDB
All DBs
Position
1199795..1200607
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AA seq
270 aa
AA seq
DB search
MPELPEVETTRRGIAPHLEGHKVTRLVVRDRRLRWPIPEDLAIQIEDQTFTSVKRRAKYL
LMEIGGGTLIGHLGMSGSLRLVPVGTPPAKHEHVDIELDSGLALRYTDPRRFGALLWSRE
PLAHPLLAKLGPEPLSDEFDGERLYQCSRGKSMAVKPFIMDNAVVVGVGNIYATEALFAA
GIDPRREAGRISRARYQRLAEEIRRVLAHAIERGGTTLRDFIGGDGQPGYFQQELFVYGR
GGQLCKLCGGTLSECRLGQRATVFCRNCQS
NT seq
813 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaattgcctgaagtcgaaactacccgtcgcggtattgccccgcatcttgaaggc
cacaaggttacccgcctggtggtgcgtgatcgccggctgcgctggccgatccctgaggat
ctggcgatccagattgaggatcagacctttaccagcgtcaagcggcgggccaagtacctg
ttgatggagatcggcggcggcactctgatcggccatctgggcatgtccggcagcctgcgg
ctggtcccggtcggcaccccgccagccaagcatgagcatgtcgatatcgagctggattct
gggctggcgctgcgctacaccgatccgcgtcggttcggcgccttgctctggagtcgtgag
ccgctggcacacccgctgctggccaaactggggcctgagccattgtccgacgagtttgac
ggcgagcgtctgtatcagtgctcgcgaggcaagagcatggcggtcaaacccttcatcatg
gataacgccgtggtggttggggtgggcaacatctacgccaccgaagcactgtttgccgcc
ggcatcgacccgcgccgggaagccgggcggatcagccgggcccgctatcagcggctggcc
gaggaaattcgccgggtgctggcgcatgccatcgagcgcggcggcaccaccctccgtgac
ttcattggtggtgatggccagccgggctacttccagcaggagctgttcgtctatgggcgc
ggtggccagctgtgcaagctctgtggcggcaccctgtcagagtgccgactgggccagcga
gccacggtcttttgccgtaattgtcagagctga
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