KEGG   Halopseudomonas phragmitis: BVH74_06375
Entry
BVH74_06375       CDS       T07765                                 
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
ppha  Halopseudomonas phragmitis
Pathway
ppha03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ppha00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    BVH74_06375
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ppha03021]
    BVH74_06375
   03019 Messenger RNA biogenesis [BR:ppha03019]
    BVH74_06375
Transcription machinery [BR:ppha03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     BVH74_06375
Messenger RNA biogenesis [BR:ppha03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     BVH74_06375
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N OB_RNB AAA_25 NACHT AAA_22 S1CSD-TOTE-2 AAA
Other DBs
NCBI-ProteinID: AQZ94402
UniProt: A0A1V0B390
LinkDB
Position
complement(1377388..1378653)
AA seq 421 aa
MNLTELKQKPISELLEIADQMGLENMGRSRKQDVIFAILKKHAKSGEDIHGDGVLEILQD
GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKDGERYFALLKVDSIN
FDRPENTKNKVLFENLTPLFPDERLKMEAGNGSTEDLMARIIDLCAPIGKGQRGLLVAPP
KAGKTLMLQNIASNIARNNPECHLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPPSRHV
QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEKPKRF
FGAARNIEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMEIHLDRKIAEKRVFPAINI
NRSGTRREELLTSDDELQRMWILRKILHSMDEIAAIEFLLDRLKDTKTNDEFFQSMKRSK
N
NT seq 1266 nt   +upstreamnt  +downstreamnt
atgaatctgactgaactcaaacaaaaacccatttccgaactgcttgaaatcgccgaccag
atgggccttgaaaacatgggccgatcacgcaagcaggatgtgatcttcgccatactcaag
aagcacgccaagagcggcgaagatattcacggcgatggcgttttggaaattctgcaggat
ggttttggttttctccgctcggccgactcctcctacctcgccggccccgacgacatctac
gtttctcccagccaaatccgccgcttcaacctccgcactggtgacaccatttccggcaag
attcgccctcccaaggatggtgaacgctacttcgctctgctcaaagttgactcgatcaac
ttcgacaggccggaaaacaccaagaacaaggtcctgttcgagaacctgaccccactgttc
ccggacgaacggctgaagatggaagccggcaacggctcaactgaagacctgatggcacgc
atcatcgatctgtgcgccccgatcggcaaaggccaacgcggcctgctggtagccccgccg
aaggccggtaagacgctgatgctgcagaacattgcttcgaacatcgcacgcaacaacccc
gaatgccacctgatcgtactgctgatcgacgagcgcccggaagaagtgaccgagatgcaa
cgcaccgtgcgcggcgaagtggtcgcctcaaccttcgacgagccgccgagccgccacgtc
caggttgccgagatggtaatcgagaaagccaaacgcctggtcgagcacaagaaagacgtg
atcatcctgctcgactccattacccgtctggcccgcgcctacaacaccgtgatcccgagc
tccggcaaggtcctgaccggtggtgtcgacgctcacgccctggaaaagcccaagcgcttc
ttcggtgccgcgcgtaacatcgaggaaggcggcagcctgaccatcatcgccaccgcgctg
gtcgataccggctcgaagatggacgaagtgatctacgaagaattcaagggcaccggcaac
atggagatccacctggatcgcaagattgccgagaaacgcgtattcccggcgatcaacatc
aaccgctcgggcacccgccgcgaagaactgctgaccagcgacgacgaactgcaacggatg
tggattctgcgcaagatcctgcactccatggatgaaatcgccgccatcgaattcctcctc
gaccgtctgaaagacaccaagaccaacgacgagttcttccagtcgatgaagcgcagtaaa
aactaa

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