Halopseudomonas phragmitis: BVH74_11885
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Entry
BVH74_11885 CDS
T07765
Name
(GenBank) hypothetical protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ppha
Halopseudomonas phragmitis
Pathway
ppha03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppha00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BVH74_11885
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppha03019
]
BVH74_11885
03009 Ribosome biogenesis [BR:
ppha03009
]
BVH74_11885
Enzymes [BR:
ppha01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BVH74_11885
Messenger RNA biogenesis [BR:
ppha03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BVH74_11885
Ribosome biogenesis [BR:
ppha03009
]
Prokaryotic type
rRNA helicases
BVH74_11885
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_19
Motif
Other DBs
NCBI-ProteinID:
AQZ95408
UniProt:
A0A1V0B650
LinkDB
All DBs
Position
complement(2575932..2577644)
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AA seq
570 aa
AA seq
DB search
MSDTAPAATQFADLGLPAALLEALNSLGYETPSPIQAEAIPTLLEGHDLLGLAQTGTGKT
AAFALPVLAGIDPSLRATQALILTPTRELALQVAEALQRYAQNLRGFSVLALYGGSAFGP
QFKALERGVQVVVATPGRLTDHLRRGSLKLQQLRFLVLDEADEMLKMGFADDLEAVFDEV
PDNTQKALFSATMPPGVRNVARNHLRDPKEIRLHSGAKSSLETITQKVWEVANHHKLDAM
TRLLEVEPVEAMIVFVRTKTASLELAERLEARGFAAAALNGDLSQQLREQVVDRLKRGLL
DIVVATDVAARGLDVERITHVLNYDLPHDSESYVHRIGRTGRAGRQGTAILFATPRERRL
LHVLEKATGQKIEPQALPSADAVRSGRLNKLATRLNSASEQSGALHEQLVHDLQELTSLD
ATELAACLLSILPGAKALLEPVADLPTAPARRERDSLAERDSGLVRYKVQGGRSNGLLPK
PLVEALVKHAGLQKSQIGNIKLFNEHTAVYLPQLDSSTLNRLAGIEINGMTLQIKAWPLP
PGETEHRPRHHKPRRDFAGKQPPRKGKPRG
NT seq
1713 nt
NT seq
+upstream
nt +downstream
nt
atgtccgataccgctccggcggcgacgcagtttgccgatctcggcttgcctgcagcgctt
ctcgaggctctcaacagcctcggttatgaaaccccctccccgattcaggccgaggccatt
ccgaccctgctcgagggtcatgacctgctcggcctggctcaaaccggcaccggcaagacc
gcagcgttcgcgttgccggtactggccggcatcgacccgagcctgcgagccacccaggcc
ctgattctgaccccaacccgggagttggccctgcaggtcgctgaagcgctgcagcgctac
gcccagaatctgcgtggtttctcggtcctggccctgtacggcggctcggcctttggccca
cagttcaaagcgctggaacgcggcgtacaggtcgtggtcgcgacgcctggtcgactgacc
gaccacttgcgtcgtggcagcctgaaacttcagcaactgcgctttctggtgctcgatgaa
gccgatgaaatgctcaagatgggctttgccgacgaccttgaagcggttttcgatgaagtc
ccggacaacacccagaaggccctgttctccgcgacaatgccgcccggtgtgcgtaacgta
gcgcgcaatcatctgcgcgacccgaaagaaattcgcctgcacagcggcgccaagagcagc
ctggaaaccattacccagaaagtctgggaagtggccaaccaccacaaactggatgccatg
acccgcctgctcgaagtcgagccggttgaagccatgatcgtgttcgtgcgaaccaaaacc
gccagtctggaactggccgagcgcctagaagctcgcggctttgcggccgcggcgctgaac
ggcgatctcagccagcaactgcgtgaacaggtggtcgaccgcctcaagcgcggcctgctg
gatatcgtggttgccaccgatgtggccgcccgcggcctggacgtcgagcgtatcactcac
gtgctcaactacgacctgccgcacgacagcgagtcctatgtacaccggattggccgtacc
ggccgggctggccgccaaggcaccgcaatcttgtttgccaccccgcgcgaacggcgtctg
ctgcatgtactggagaaagccaccgggcagaaaatcgagccccaggctttacccagcgcc
gatgccgtacgcagcggccggctgaacaaactggcaacccggctgaacagcgccagcgag
caatccggcgctctgcacgagcaactggtacatgacctgcaggaactgaccagcctggac
gccaccgaactggccgcctgcctgctgtcgatcctgccgggcgccaaagccctgctggag
ccggttgcagacctgcctacagcacctgcgcgccgtgaacgtgacagcctggctgaacgc
gacagtggcctggtgcgctataaggtccagggcggacgcagcaatggcctgctaccaaaa
cctctggtcgaggccctggtcaagcatgccggcctgcagaagagccagatcggcaacatc
aagctgttcaacgagcatactgccgtctacctgccgcaactcgacagctcgacgctcaac
cgtctggctggcattgagatcaacggcatgactctgcagatcaaggcctggccgttgccg
cctggcgagaccgagcatcggccacggcaccacaagccgcgccgcgacttcgccggcaag
cagcccccacgcaagggcaagcctcgcggctaa
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