Halopseudomonas phragmitis: BVH74_12905
Help
Entry
BVH74_12905 CDS
T07765
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
ppha
Halopseudomonas phragmitis
Brite
KEGG Orthology (KO) [BR:
ppha00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppha03032
]
BVH74_12905
03400 DNA repair and recombination proteins [BR:
ppha03400
]
BVH74_12905
Enzymes [BR:
ppha01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
BVH74_12905
DNA replication proteins [BR:
ppha03032
]
Prokaryotic type
DNA Topoisomerases
BVH74_12905
DNA repair and recombination proteins [BR:
ppha03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
BVH74_12905
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
AQZ95592
UniProt:
A0A1V0B6M4
LinkDB
All DBs
Position
2770673..2773291
Genome browser
AA seq
872 aa
AA seq
DB search
MGKALVIVESPAKAKTINKYLGNDFVVKSSIGHIRDLPTSGGKTESKPKNGRKAASAQEL
DKATKARIQLVNRMGVDPENGWAARYEILPGKEKVIDELRRLAKDADTVYLATDLDREGE
AIAWHLRESIGGDESRYKRVVFNEITKKAIQEAFSQPGELDLNRVNAQQARRFLDRVVGY
MVSPLLWQKIARGLSAGRVQSVAVKLIVDREREIRAFVPEEFWEVHALLDTPKAESVRFE
VVRQNGETFRPLNKAQTDAALEKLKAASYQVIKREDKPTSTRPGAPFITSTLQQAASTRL
GFSVKKTMMMAQRLYEAGYITYMRTDSTNLSADAIGMARGYIESAFGKQYLPEKPNVYSS
KEGAQEAHEAIRPSDVKLKATDLKGMERDAERLYELIWRQFVACQMPPARYLSTSITAQA
GEFELRAKGRILQFDGYTKVMPPQGKGGEDEVLPDLQVQDALKLNKLDPKQHFTKPPARY
SEASLVKELEKRGIGRPSTYAAIISTIQERGYVTLNNRRFYAEKMGDIVTDRLSESFPNL
MDYGFTANMEESLDEVAQGGVPWKQVLDEFYADFRRKLSAAEASTEGQGMRANQPTLTDI
ACHECGRPMMIRTASTGVFLGCSGYALPPKERCKATINLVPGNEVAEDDDEGESRVLRTR
HRCALCGTAMDSYLVDEKRKLHVCGNNPDCSGFEIEEGQFKIKGYDGPTLECDKCGSEMQ
LKTGRFGKYFGCTNSVCKNTRKLLKNGEAAPPKMDPVKMPELRCEKVDDIYVLRDGASGL
FLAASQFPKNRETRAPLVAELLPHQAEIDPKYHFLFDAPVKDPDGHPTVVRYSRKTKEQY
VQSEVEGKPTGWRAFYDGKQWSVDDGRSKAKR
NT seq
2619 nt
NT seq
+upstream
nt +downstream
nt
atgggaaaagcactggtcattgtggaatcgcccgccaaagccaagacgatcaacaagtat
cttggtaatgatttcgtggtgaagtcgagtatcggccatatccgcgatctgcccaccagc
gggggcaagaccgagagcaagcccaaaaatgggcgcaaggcggcgtcggcccaggagctc
gacaaggccaccaaggcacgtatccaactggtcaatcgcatgggggttgaccctgagaat
ggctgggcggcgcgctacgagattctgccgggcaaggaaaaggtcatcgacgagctgcgt
cgtctggccaaggatgccgataccgtctacctcgcaacggacttggaccgtgagggggag
gcgattgcctggcacctgcgcgaaagcatcggcggcgatgagagccgctacaaacgcgtg
gtgttcaatgaaattaccaagaaggccatccaggaggccttttcccagcccggtgagctg
gatctgaatcgggttaatgcccagcaggcccgacgtttcctcgaccgggtagtgggctat
atggtctcgccgctgctgtggcagaaaattgcccgtggtctgtcggctggtcgggtgcag
tcggtagcggtcaagctgatcgttgatcgtgagcgggagatccgcgcttttgtcccggaa
gagttctgggaagtgcatgcactgctggatacgcccaaggccgagtcagtacggttcgag
gtggtgcgccagaatggcgagaccttccgtccgcttaacaaagcgcagaccgatgcggcg
ctggaaaagctcaaagcggctagctatcaggtaatcaagcgcgaagacaagccaaccagt
acgcgtcctggtgcgccctttattacctcgacgctgcaacaggctgccagtactcgcctg
ggcttcagtgtcaagaaaaccatgatgatggcccagcgtctctacgaagcgggctatatc
acttatatgcgaaccgactcgaccaatttgtcggccgacgccatcggcatggcccgcggt
tacatcgaatcggctttcggtaagcagtacctgccggaaaaacccaacgtctacagcagc
aaggaaggcgctcaggaggcgcatgaggcgattcgtccttctgatgttaagctcaaggct
actgacctcaagggcatggagcgtgacgctgagcgcctttacgagctgatctggcgtcag
ttcgtggcctgtcagatgccgccagcccgttacctgtcgaccagcatcaccgcgcaggct
ggtgagttcgaactgcgcgccaagggccgtatcctgcagtttgatggttacaccaaggtc
atgccgccgcaaggcaagggcggcgaggacgaggtgttgccggatctgcaggtccaggac
gcactcaagctcaacaagcttgaccccaagcagcactttaccaagccgccggctcgctac
tccgaggccagtctggtcaaggagctggaaaagcgcggtatcggccggccgtcgacctat
gcagcgatcatctcgaccattcaggagcgcggctacgtgaccctgaataatcggcgcttc
tatgctgaaaagatgggcgatatcgtcaccgaccggctcagcgaaagcttccccaacctg
atggactacggctttactgccaatatggaagagtcgctggatgaagtggctcagggcggg
gtgccttggaagcaggtgctggatgagttctatgccgactttcggcgcaagctcagcgca
gccgaagcaagtaccgaagggcagggaatgcgggctaatcagccaaccctgaccgatatc
gcctgccacgaatgtggccggcctatgatgatccgtaccgcctcgactggggtgtttctc
ggctgctctggctatgcactgccgcccaaagagcgctgcaaggcgaccatcaacctggtg
ccgggcaacgaagtggctgaggatgatgacgaaggtgagtcacgggtactgcgtacccgt
catcgttgcgcgctgtgcggtacggcgatggacagttatctggtcgacgagaagcgcaag
ctgcacgtttgcggtaataacccggattgcagcggctttgagatcgaagaagggcagttc
aagatcaagggttatgatggcccgacccttgagtgcgacaaatgtggcagtgaaatgcag
ctcaagaccggtcgtttcggcaagtacttcggctgcaccaacagcgtctgcaagaacact
cgcaagctactgaaaaatggtgaggccgcgccgccgaagatggatccggtgaagatgcct
gagctgcgctgtgaaaaggttgatgatatctacgtgctgcgtgatggcgcttctgggctg
ttcctggctgccagtcagttcccgaagaaccgcgagacccgggcgccgctggtggccgag
ctgctgccgcatcaggctgaaatcgatccaaaataccacttcctgttcgatgctccggta
aaagacccggatggtcatccgacggttgtgcgttacagccgcaagacaaaagagcaatat
gtacagagtgaggtggaaggcaagccgacgggttggcgggccttctatgacggcaagcag
tggtcggtggacgatggccgcagcaaagccaagcgttga
DBGET
integrated database retrieval system
