Phocoena phocoena (harbor porpoise): 136117977
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Entry
136117977 CDS
T11058
Symbol
CPSF2
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 2
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
pphc Phocoena phocoena (harbor porpoise)
Pathway
pphc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pphc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
136117977 (CPSF2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pphc03019
]
136117977 (CPSF2)
Messenger RNA biogenesis [BR:
pphc03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
136117977 (CPSF2)
U7-dependent histone pre-mRNA processing factors
136117977 (CPSF2)
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Lactamase_B
Anti-Pycsar_Apyc1
Lactamase_B_2
Motif
Other DBs
NCBI-GeneID:
136117977
NCBI-ProteinID:
XP_065727104
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Position
2:complement(11769823..11800021)
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AA seq
782 aa
AA seq
DB search
MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSMDIIDSLRKHVHQIDAVLL
SHPDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVD
AAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR
EIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLETLRGDGNVLIAVDTA
GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN
NPFQFRHLSLCHGLSDLARVPSPKVVLASQPDLECGFSRDLFIQWCQDPKNSIILTYRTT
PGTLARFLIDNPSEKITEIELRKRVKLEGKELEEYLEKEKLKKEAAKKLEQSKEADIDSS
DESDVEEDIDQPSAHKTKHDLMMKGEGSRKGSFFKQAKKSYPMFPAPEERIKWDEYGEII
KPEDFLVPELQATEEEKSKLESGLTNGDEPMDQDLSDVPTKCISTTESIEIKARVTYIDY
EGRSDGDSIKKIINQMKPRQLIIVHGPPEASQDLAECCRGFGGKDIKVYMPKLHETVDAT
SETHIYQVRLKDSLVSSLQFCKAKDAELAWIDGVLDMRVSKVDTGVILEEGELKDDGEDS
EMQVDAPSDSSVIAQQKAMKSLFGDDEKETGEESEIIPTLEPLPPHEVPGHQSVFMNEPR
LSDFKQVLLREGIQAEFVGGVLVCNNQVAVRRTETGRIGLEGCLCQDFYRIRDLLYEQYA
IV
NT seq
2349 nt
NT seq
+upstream
nt +downstream
nt
atgacatctattatcaaattaactaccctttctggggtccaggaagagtctgctctttgc
tatcttctccaagtcgatgagtttagatttttattggactgtggctgggatgagcacttt
tctatggatattatagattccctgaggaagcatgttcaccagattgatgcagtactgttg
tctcaccccgatcctctccatcttggcgccctaccgtatgctgtcggaaagttgggtctg
aactgtgctatctatgcaaccattcctgtttataaaatggggcagatgttcatgtatgat
ctttatcagtcccgacacaatacagaagattttacactctttacactagatgatgtggat
gcagcctttgataaaatacagcagttaaaattctctcagattgtgaatttgaaaggtaaa
ggacatggcttgtctatcacacctctaccagctggtcatatgataggtggaacaatatgg
aagatagtcaaagatggagaagaagaaattgtttatgcagttgacttcaaccacaagagg
gagatccacttaaatggatgttccctggaaatgctaagcagaccgtctctacttatcaca
gattcatttaatgctacgtatgtgcagccgaggagaaaacaaagagacgagcaacttctg
acaaatgtcctggaaacacttcgaggtgatggaaatgtgttaatagcagtggacactgct
ggccgggttttggaacttgctcaactccttgatcaaatttggagaactaaagatgcagga
ttgggtgtttactcattggcactcctaaataatgtcagttataatgtggtggagttttct
aagtcccaggtagaatggatgagtgataaattgatgagatgttttgaagacaaaagaaat
aatccatttcagtttcgtcatctctctctatgtcatggtctttctgacttggctcgagta
cctagccctaaagtggtacttgccagccagcccgacctggaatgtggattttcaagggat
ctctttattcagtggtgccaggaccctaaaaactcgatcattctaacttacagaactact
cctgggactttagcacgtttcctaattgataatccttctgaaaaaattacagaaatagag
ttgaggaaacgtgtgaaacttgaagggaaagaacttgaagaatacttggaaaaagagaaa
ctaaagaaagaagctgctaaaaaacttgaacagtcaaaagaggcagacatagattccagt
gatgagagtgacgttgaggaagatattgaccagccatcagctcataagactaagcacgac
ctgatgatgaaaggtgaaggtagtcgtaaaggaagtttcttcaaacaggctaaaaagtct
tatcctatgtttcctgccccagaagaaagaattaaatgggatgaatatggagaaattatc
aaaccagaggatttcttagtgccagaacttcaagctactgaagaagaaaaaagcaaatta
gagtctggcctgacaaatggagatgaacccatggatcaggatttatctgatgttcctact
aagtgtatttctacaacagaatctatagaaataaaagccagggttacttacatagactat
gaaggacgctctgatggggattccattaagaaaatcatcaatcaaatgaaaccacgacag
ttgatcattgtccatggaccaccagaggccagtcaggatcttgcagagtgctgccgtggg
tttggtgggaaagatattaaagtgtacatgccaaagctacatgaaacagtcgatgccact
agtgaaactcatatctaccaggtgagattaaaagattcacttgtcagctcccttcagttt
tgtaaggcaaaagatgctgaattagcttggatagatggtgtcttagacatgagagtttcc
aaagtggacacaggagttattttagaagaaggagaacttaaggatgacggagaagactca
gaaatgcaagtggacgctccttcagattctagcgttatagcacagcagaaggccatgaaa
agtctgtttggagacgatgagaaagaaacaggtgaagaaagtgagatcattcctactttg
gaacccttaccacctcatgaggttcctggacatcagtcagtttttatgaatgaaccaaga
ctgtcggacttcaaacaagttcttttaagggaggggatccaagctgagttcgtaggaggt
gtactcgtttgcaacaatcaagtagcagtccgtagaacggaaactggacgcattggatta
gaaggctgcctttgtcaagatttttataggataagagaccttttatatgaacagtatgcc
attgtgtaa
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