KEGG   Phocoena phocoena (harbor porpoise): 136118275
Entry
136118275         CDS       T11058                                 
Symbol
SKIC8
Name
(RefSeq) superkiller complex protein 8 isoform X1
  KO
K12602  WD repeat-containing protein 61
Organism
pphc  Phocoena phocoena (harbor porpoise)
Pathway
pphc03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pphc00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    136118275 (SKIC8)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pphc03019]
    136118275 (SKIC8)
Messenger RNA biogenesis [BR:pphc03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Ski complex
     136118275 (SKIC8)
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_WDR3_1st WD40_Prp19 Beta-prop_THOC3 WD40 Beta-prop_IFT122_1st WD40_WDHD1_1st Beta-prop_WDR3_2nd WD40_CDC20-Fz WD40_MABP1-WDR62_2nd Beta-prop_EML_2 Beta-prop_WDR90_POC16_2nd Beta-prop_WDR36-Utp21_2nd WD40_Gbeta WDR55 EIF3I Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd ANAPC4_WD40 Beta-prop_WDR36-Utp21_1st WD40_MABP1-WDR62_1st Beta-prop_WDR75_1st Beta-prop_EML DSE1_N Beta-prop_SCAP Beta-prop_RIG_2nd Beta-prop_TEP1_C CFAP251_N WDR90_beta-prop_4th Beta-prop_VPS8 Beta-prop_WDR19_1st Beta-prop_NOL10_N eIF2A Beta-prop_Aladin Beta-prop_ACSF4 Beta-prop_Vps41 Beta-prop_DCAF4 Beta-prop_WDR35_TULP_N Beta-prop_WDR41 WD40_RFWD3 Beta-prop_NWD2_C Beta-prop_EIPR1 NBCH_WD40 ASA1 Beta-prop_IFT140_1st Beta-prop_SPT8 Beta-prop_Nup120_160 Tricorn_2nd Beta-prop_HPS5 Ge1_WD40 PAC11 PD40 Cytochrom_D1 TRM82_WD PROPPIN Beta-prop_WDR75_2nd Beta-prop_DCAF12 Beta-prop_NUP159_NUP214 WD_LRWD1 Beta-prop_LRRK2 WDR54 WD40_like Beta-prop_RIG_1st BCAS3_WD40 GSDH Beta-prop_IFT122_2nd UCP007778 Nucleoporin_N NUP37_N DUF2415
Other DBs
NCBI-GeneID: 136118275
NCBI-ProteinID: XP_065727630
LinkDB
Position
2:119631868..119649350
AA seq 305 aa
MTNQYSILFKQEQAHDDAIWSVAWGTNKKENSEAVVTGSLDDLVKVWKWRDEKLDLQWSL
EGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQY
LATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG
KLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAF
CPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHI
YDCPI
NT seq 918 nt   +upstreamnt  +downstreamnt
atgaccaaccagtacagtattctcttcaaacaagagcaagcccatgatgatgccatttgg
tcagttgcctgggggacaaacaagaaagaaaactctgaggcagtggtcacaggatccctg
gatgacctggtgaaggtctggaaatggcgtgatgagaagctggacctacagtggagtctg
gagggccatcagctgggtgtggtgtctgtggacatcagccacaccctgcccattgctgcg
tccagttctcttgatgctcatattcgtctctgggacttggaaaacggcaaacagataaag
tctatagatgcaggacctgtggatgcctggactttggccttttctcctgattcccagtat
ctggccacaggaactcatgtggggaaagtgaacatttttggtgtggaaagtgggaaaaag
gaatattctttggacacaagaggaaaattcattcttagtattgcatatagtcctgatggg
aagtatctggccagtggagccatagacggaatcatcaatatttttgatattgcaaccggg
aaacttctgcacacgctggaaggccacgctatgcccattcgctccttgactttttccccg
gattcgcagctccttgtcactgcttcagatgatggctacatcaagatctatgatgtacag
cacgctaacttggctggcactttgagtggccacgcatcctgggtgctgaacgttgcattt
tgtcctgatgacacacactttgtttccagctcatctgacaaaagtgtaaaagtttgggat
gttggaacgaggacttgtgttcacaccttctttgatcaccaggatcaggtctggggagta
aaatacaatggaaatggctcaaagattgtgtctgtcggagatgatcaggaaattcacatc
tacgattgtccaatttaa

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