Phocoena phocoena (harbor porpoise): 136118795
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Entry
136118795 CDS
T11058
Symbol
VCAM1
Name
(RefSeq) vascular cell adhesion protein 1 isoform X1
KO
K06527
vascular cell adhesion molecule 1
Organism
pphc Phocoena phocoena (harbor porpoise)
Pathway
pphc04064
NF-kappa B signaling pathway
pphc04514
Cell adhesion molecules
pphc04668
TNF signaling pathway
pphc04670
Leukocyte transendothelial migration
pphc04933
AGE-RAGE signaling pathway in diabetic complications
pphc05143
African trypanosomiasis
pphc05144
Malaria
pphc05417
Lipid and atherosclerosis
pphc05418
Fluid shear stress and atherosclerosis
Brite
KEGG Orthology (KO) [BR:
pphc00001
]
09130 Environmental Information Processing
09132 Signal transduction
04064 NF-kappa B signaling pathway
136118795 (VCAM1)
04668 TNF signaling pathway
136118795 (VCAM1)
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
136118795 (VCAM1)
09150 Organismal Systems
09151 Immune system
04670 Leukocyte transendothelial migration
136118795 (VCAM1)
09160 Human Diseases
09174 Infectious disease: parasitic
05144 Malaria
136118795 (VCAM1)
05143 African trypanosomiasis
136118795 (VCAM1)
09166 Cardiovascular disease
05417 Lipid and atherosclerosis
136118795 (VCAM1)
05418 Fluid shear stress and atherosclerosis
136118795 (VCAM1)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
136118795 (VCAM1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
pphc04515
]
136118795 (VCAM1)
04090 CD molecules [BR:
pphc04090
]
136118795 (VCAM1)
04091 Lectins [BR:
pphc04091
]
136118795 (VCAM1)
Cell adhesion molecules [BR:
pphc04515
]
Immunoglobulin superfamily
VCAM
136118795 (VCAM1)
CD molecules [BR:
pphc04090
]
Proteins
136118795 (VCAM1)
Lectins [BR:
pphc04091
]
I-type lectins (Siglecs)
136118795 (VCAM1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_3
I-set
C2-set
ig
Ig_2
V-set
Ig_4
C2-set_2
Ig_6
ICAM1_3_5_D2
ICAM_N
Ig_5
C1-set
C2-set_3
Adhes-Ig_like
TrkA_C
Motif
Other DBs
NCBI-GeneID:
136118795
NCBI-ProteinID:
XP_065728172
LinkDB
All DBs
Position
1:89216235..89233498
Genome browser
AA seq
739 aa
AA seq
DB search
MPRKMVVIFGASNILWMVFAVSQAFKIDIFPESKIIAQIGDSISLTCSTTGCESPSFSWR
TQIDSPLNGKVRNEGTKSTLTMDPVSLGNEHYYLCTVICESQKLERGIPVEIYSFPKDPE
IHLSGPLEVGKPVTVTCLVPDVYPYERLEIELLKGNRSVKTQDFLEVSEMKSQETKSVEV
TFTPIDEDIGKALVCQATLHINEIDSQPQVRKTTKKLQVYISPKDTVISVNPSTSLQEGD
SVTMTCTSEGLPAPQIFWSKKLDNGNLQLLSENATLTLIAMRMEDSGIYMCEGVNLVGKD
RKEVKLIVQEKMFTVEISPGSQIAAQIGDSVVLTCDVMGCESPSFSWRTQIDSPLNGKVR
SEGSKSTLTLSPVRFENEHFYLCTVTCGHKKLEKGTHVELYSFLRDPEIEMSGLLVSGNP
VTVSCKVPDVYPFDRLEIELLKGESIMKNKIFWEDVSKKSLETKSLELTFIPTTEDTGKV
LVCLAKLPIDEMEFEPKQRQSTQILYVNVAPRDTTILISPSSILEEGRSVNMTCSSDGLP
APKILWSRLLSNGDLQPLSENTTLTLTSTKMEDSGIYVCEGINQVGISRKEVKLIIQVAP
KDIRLTAFPSESVKEGDTVIISCTCGNVPQTLIILKKKAGSGYIVLKSTDGAYTIHRAQL
EDAGVYECESKNEVGLQLRSITLDVKGRESNKHYFSPELLVLYCASSLIIPAIGMIIYFA
RKANMKGSYSLVEAQKSKV
NT seq
2220 nt
NT seq
+upstream
nt +downstream
nt
atgcctaggaagatggttgtgatctttggagcctcaaatatactttggatggtgtttgca
gtttctcaagcttttaaaatcgacatcttccctgaatccaaaattattgctcagattggt
gactccatctcactgacttgtagcacaacaggctgtgagtccccatcgttctcctggaga
actcagatagacagtccactgaacgggaaggtgagaaatgaggggaccaaatccacgctg
accatggatcctgttagtctggggaatgaacactattacctgtgcacagtgatttgtgag
tctcagaaactggaaagaggaatcccagtggagatctactctttccctaaggacccagag
atccatttgagtggccccctggaggttgggaagccagtcacagtcacgtgtttggtccct
gatgtttacccatatgaaaggctggagatagaattactgaagggcaaccgttctgtgaag
acacaggactttctggaggtttcagaaatgaagtcccaggaaacgaagagtgtggaagta
accttcactcctattgatgaggatattgggaaagctcttgtttgccaagctacattacac
attaatgaaattgattctcaaccccaagtaaggaagactacaaaaaaactgcaagtctac
atctcacccaaggacacagttatatctgtgaacccctccacaagcctgcaagaaggtgac
tccgtgacgatgacatgtaccagtgaaggtctaccagctccacagattttctggagcaag
aaattagacaatgggaatctacagctcctttctgagaatgcaactctcactttaattgct
atgaggatggaagattctggaatttatatgtgtgaaggagttaatctggttgggaaagac
agaaaagaggtgaaattaattgttcaagagaaaatgtttactgtagagatctcccctgga
tcccagattgctgctcagattggcgactcagttgtgttgacctgtgatgtcatgggttgt
gagtccccatctttctcttggagaacccagatagacagtcctctgaacgggaaggtgagg
agcgaggggtccaagtccacattgaccctgagtcctgtgagatttgagaacgaacatttt
tatctgtgcaccgtgacatgtgggcataagaaactggaaaaaggaacccatgtggagctc
tactccttccttagagatccagaaattgagatgagtggtctgttagtgagtggaaaccca
gtcactgtaagctgtaaggttcctgatgtgtacccttttgaccggctggaaattgaatta
cttaaaggggagagtattatgaagaataaaatcttttgggaagatgtaagtaagaaatcc
ctagagaccaagagtttggaactgaccttcatccccaccactgaagacacgggaaaagtt
cttgtttgtctggctaagttacctattgatgaaatggaatttgaacccaaacaaaggcag
agtacacagatactatatgttaatgttgctcccagggatacaaccatcttgatcagcccc
tcctccatcctggaggaaggtagatctgtgaatatgacatgctctagcgatggccttcca
gctccgaaaatcctgtggagcaggctgctaagtaatggggatctacagcctctttctgag
aataccactcttaccttaacgtctacaaaaatggaagattctggtatttatgtctgtgaa
ggcattaaccaggttggaataagcagaaaagaagtcaaattaattatccaagttgctccg
aaagatatacgacttacagcttttccttctgagagtgtcaaggaaggagacactgtcatt
atctcctgtacatgtggaaatgtaccccaaactttgataatcctgaagaaaaaagcaggg
tcaggctacatagtgctgaagtctacagatggtgcatataccatccacagggcccagttg
gaggatgcgggagtatacgaatgtgaatctaaaaatgaagttggcttgcaattaagaagc
ataacacttgatgttaaaggaagagaaagtaacaagcactatttttctcctgaacttctc
gtgctctattgtgcatcctccttaataatacctgccattggaatgattatttactttgct
agaaaagccaacatgaaagggtcatacagtcttgtagaagcacagaaatcaaaagtgtag
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