Phocoena phocoena (harbor porpoise): 136118972
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Entry
136118972 CDS
T11058
Symbol
VPS18
Name
(RefSeq) vacuolar protein sorting-associated protein 18 homolog
KO
K20181
vacuolar protein sorting-associated protein 18
Organism
pphc Phocoena phocoena (harbor porpoise)
Pathway
pphc04140
Autophagy - animal
pphc04148
Efferocytosis
pphc05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
pphc00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
136118972 (VPS18)
04148 Efferocytosis
136118972 (VPS18)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
136118972 (VPS18)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pphc04131
]
136118972 (VPS18)
Membrane trafficking [BR:
pphc04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
136118972 (VPS18)
Hops complex
136118972 (VPS18)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pep3_Vps18
VPS18_RING_C
Clathrin
zf-RING_5
zf-C3HC4_2
zf-RING_16
KNOX2
zf-ANAPC11
zf-RING_Vps41
zf-RING_2
zf-RING_UBOX
zf_RING_Vps8
zf-rbx1
zf-C3HC4
Motif
Other DBs
NCBI-GeneID:
136118972
NCBI-ProteinID:
XP_065728422
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All DBs
Position
2:84155833..84163965
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AA seq
973 aa
AA seq
DB search
MASILDEYEDSLSRSAVLQPGCPSVGIPHSGYVNAQLEKEVPIFTRQRIDFTPSERITSL
VVSCNQLCMSLGKDTLLRIDLGKANEPNHMELGRKDDAKVHKMFLDPTGSHLLIALSSTE
VLYVNRNGQKVRPLARWKGQLVESVGWNKALGTESSTGPILVGTAQGQIFEAELSASEGG
LFGPAPDLYFRPLYVLNEEGGPAPVCSLEAERGPEGRGFVIATTRQRLFQFIGRAAEGAE
AQGFSGLFAAYTDHPPPFREFPSSLGYSELAFYTPKLRSAPRAFAWMMGDGVLYGSLDCG
RPDSLLSEERVWEYPEGVGPGASPPLAIVLTQFHFLLLLADRVEAVCTLTGQVVLRDHFL
EKFGPLKHMVKDSSTGHLWAHTERAVFRYQVQREARDVWRTYLDMNRFDLAKEYCRERPD
CLDTVLAREADFCFRQHRYLESARCYALTQSYFEEIALKFLEAHQEEALAEFLQRKLASL
KPAERTQATLLTAWLTELYLSRLGALQGDPEALNLYRETRERFRAFLSSPRHKEWLFASR
ASIHELLASHGDTEHMVYFAVIMQDYERVVAYHCQHEAYEEALAVLARHRDPQLFYKFSP
ILIRHIPRQLVDAWIELGSRLDARQLIPALVNYSQGGEAQQVSQAIRYMEFCVNVLGETD
QAIHNYLLSLYARGQPASLLAYLEQAGASPHRVHYDLKYALRLCAEHGHHHACVHVYKVL
ELYEEAVDLALQVDVDLAKQCADLPEEDEELRKKLWLKIARHVVQEEEDVQTAMACLASC
PLLKIEDVLPFFPDFVTIDHFKEAICSSLKAYNHHIQELQREMEEATASAQRIRRDLQEL
RGRYGTVEPQDKCATCDFPLLNRPFYLFLCGHMFHADCLLQAVRPGLPAYKQARLEELQR
KLGAAPPPAKGSARAKEAEGGAATGGPSREQLKADLDELVAAECVYCGELMIRSIDRPFI
DPQRYEEEHLSWL
NT seq
2922 nt
NT seq
+upstream
nt +downstream
nt
atggcgtctatcctggatgaatacgaggactccctctcccgctcggccgtcttgcagccc
ggctgccccagcgtcggcatcccccactcgggatatgtgaatgcccagctagagaaggaa
gtgcccattttcacgaggcagcgcattgactttaccccttctgagcgtatcaccagtctt
gtcgtctcctgcaatcagctctgcatgagcctgggcaaggatacgctactccgcattgac
ttaggcaaagcaaatgaacccaaccacatggagctggggcgcaaggatgatgccaaagtt
cacaagatgttcctggaccctactggctctcacctgctgatcgctctgagcagcactgag
gtcctctacgtgaaccgtaatggacagaaagttcggcccctggcacgctggaaggggcag
ctggtggagagtgtgggctggaacaaggccctgggtactgagagcagcacaggccccatc
ctggtcggcactgcccaaggccagatctttgaagcagagctctcggccagcgagggtggg
cttttcggccctgccccggatctctacttccgtccgttgtatgtgctaaacgaagaaggg
ggcccagcacctgtgtgctccctcgaggcggagcggggccctgaagggcgtgggtttgtc
atcgccaccactcggcagcgcctcttccagttcataggccgagcggccgagggagctgag
gcccagggcttctcagggctctttgctgcctacactgaccacccaccaccattccgtgag
ttccccagcagtctgggctacagtgagttggccttctacacccccaagttgcgctctgca
ccccgggctttcgcctggatgatgggggatggcgtgttgtatggctcgttggactgtggg
cgtcccgactccctgctgagtgaggagcgggtctgggagtacccagagggggtgggtcct
ggggccagcccacccctggccatcgtcctgacccagttccacttcctgctgctgctggca
gaccgggtggaggcggtgtgcacgctgacggggcaggtggtgctgcgggaccacttcctg
gagaagtttgggccgctgaagcacatggtgaaggactcctccacaggccacctgtgggcc
cacaccgagcgggccgtcttccgctaccaggtacagcgggaggcccgggatgtctggcgc
acctacctggacatgaaccgcttcgacctggccaaagagtattgccgagagcggcctgac
tgcctggacacggtcctggcccgggaggccgacttctgcttccgccagcatcgttacctg
gagagtgcccgctgctacgccctgactcagagctactttgaggagattgcactcaagttc
ttggaggcccaccaggaggaggcgctggccgagttcctgcagcgaaaactggccagtttg
aagcctgctgagcgcacccaggccacactgcttaccgcctggctgacggagctctacctg
agccgactcggggccctgcagggtgaccctgaggccctgaacctctaccgggaaacccgg
gagcgtttccgcgccttcctaagcagcccccgccacaaggagtggctcttcgccagccgg
gcctccatccacgagctgctcgccagccacggggacacagagcacatggtatacttcgct
gtgatcatgcaggactacgagcgcgtggtggcataccactgccagcatgaggcctacgag
gaggccctggctgtgctggcccgccaccgtgacccccagctcttctacaagttctcaccc
atcctcatccgtcacatccctcgccagctggtggacgcctggattgagctgggcagccgg
ctggatgcccggcagctcatccctgccctggtgaactatagccagggtggcgaggcccag
caggtgagccaggccatccgctacatggagttctgcgtgaacgtgctgggcgagactgat
caggccattcacaattacctgctgtcgctctatgcccgaggccagccagcctcgctgctg
gcctacctcgagcaggccggggccagcccgcaccgggtacattatgacctcaagtacgcg
ctgcggctctgtgctgagcatggccaccaccatgcttgcgtccatgtctacaaggtcctg
gagctgtatgaggaggctgtggacctggccctgcaggtggacgtggacctggccaagcag
tgtgctgacctgcccgaggaagatgaggagctgcgcaagaagctgtggctgaagattgct
cggcatgtggtgcaggaggaggaggatgtgcagacggccatggcctgcctggccagctgc
cccctgctcaagatcgaggacgtgctgcctttcttccctgacttcgtcaccatcgaccac
ttcaaggaggcgatctgcagctcgctgaaggcttacaaccaccacatccaagagctgcag
cgggagatggaagaggccacggccagcgcccagcgcatccggcgagacctgcaggagctg
cggggccgctatggcaccgtggagccccaggacaaatgtgccacctgcgacttccccctg
ctcaaccgccctttttacctcttcctctgtggccacatgtttcacgctgactgcctgctg
caggccgtgcggcctggcctgccggcctacaagcaggctcggctcgaggagctacagcga
aagctgggcgccgctccaccccctgccaagggctctgcccgggctaaggaggccgagggg
ggcgctgccaccggggggcccagccgggaacagctcaaggctgacctggatgaactggtg
gctgctgagtgcgtgtactgtggggagctgatgatccgctctattgaccggcccttcatc
gaccctcagcgctacgaggaggagcacctcagttggttgtag
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