Phocoena phocoena (harbor porpoise): 136118991
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Entry
136118991 CDS
T11058
Symbol
RORA
Name
(RefSeq) nuclear receptor ROR-alpha isoform X1
KO
K08532
RAR-related orphan receptor alpha
Organism
pphc Phocoena phocoena (harbor porpoise)
Pathway
pphc04659
Th17 cell differentiation
pphc04710
Circadian rhythm
pphc05017
Spinocerebellar ataxia
pphc05321
Inflammatory bowel disease
Brite
KEGG Orthology (KO) [BR:
pphc00001
]
09150 Organismal Systems
09151 Immune system
04659 Th17 cell differentiation
136118991 (RORA)
09159 Environmental adaptation
04710 Circadian rhythm
136118991 (RORA)
09160 Human Diseases
09163 Immune disease
05321 Inflammatory bowel disease
136118991 (RORA)
09164 Neurodegenerative disease
05017 Spinocerebellar ataxia
136118991 (RORA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pphc03000
]
136118991 (RORA)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
pphc03310
]
136118991 (RORA)
Transcription factors [BR:
pphc03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
136118991 (RORA)
Nuclear receptors [BR:
pphc03310
]
1. Thyroid hormone like
1F. RAR-related orphan receptor
136118991 (RORA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
Motif
Other DBs
NCBI-GeneID:
136118991
NCBI-ProteinID:
XP_065728444
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Position
2:complement(103575518..104297506)
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AA seq
523 aa
AA seq
DB search
MESAPAAPDPAASEPGSSGADAAAGSRETPLNQESARKTEPPAPVRRQSYSSTSRGISVT
KKTHTSQIEIIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKNCLIDRT
SRNRCQHCRLQKCLAVGMSRDAVKFGRMSKKQRDSLYAEVQKHRMQQQQRDHQQQPGEAE
PLTPTYSISANGLTELHDDLSSYIDGHTPEGSKADSAVSSFYLDIQPSPDQSGLDINGIK
PEPICDYTPASGFFPYCSFTNGETSPTVSMAELEHLAQNISKSHLETCQYLREELQQITW
QTFLQEEIENYQNKQREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGS
LEVVFIRMCRAFDSQNNTVYFDGKYASPDVFKSLGCEDFISFVFEFGKSLCSMHLTEDEI
ALFSAFVLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKNHREDGILTKLICKVSTLRAL
CGRHTEKLMAFKAIYPDIVRLHFPPLYKELFTSEFEPAMQIDG
NT seq
1572 nt
NT seq
+upstream
nt +downstream
nt
atggagtcagctccggcagcccccgaccccgccgccagcgagccgggcagcagcggcgcg
gacgcggccgccggctccagggagaccccgctgaaccaggaatccgcccgcaagaccgag
ccgcccgccccggtgcgcagacagagctattccagcaccagcagaggtatctcagtaaca
aagaagacgcatacatctcaaattgaaattattccatgcaagatctgtggagacaaatca
tcaggaatccattatggtgtcattacatgtgaaggctgcaagggctttttcaggagaagt
cagcaaagcaatgccacctactcctgtcctcgtcagaagaactgtttgattgatcgaacc
agtaggaaccgctgccaacactgtcgcttacagaaatgccttgccgtggggatgtctcga
gatgctgtaaaatttggccgcatgtcgaaaaagcaacgagacagcttgtacgcagaagta
cagaaacaccggatgcagcagcagcagcgagaccaccaacagcagcctggagaggccgag
ccgctgactcccacctacagcatctcggccaacgggcttacggagcttcacgacgacctc
agcagctacattgacgggcacacccccgagggcagcaaggcagactctgccgtcagcagc
ttctacctggacatacagccttccccggaccagtcaggtcttgatatcaacggaatcaaa
ccagaaccaatatgtgactacacaccagcatcaggcttctttccctactgctctttcacc
aatggagagacgtccccaactgtgtccatggcagaactagaacaccttgcacagaatata
tctaaatcacatctggaaacttgccaatacttgagagaagagctccagcagataacgtgg
cagacctttctgcaggaggagattgagaattaccaaaacaagcagcgggaggtaatgtgg
cagttgtgtgccatcaaaattacagaagctatacagtatgtggtggagtttgccaaacgc
attgatggatttatggaactgtgtcaaaacgatcaaattgtgcttctcaaagcaggttct
ctggaggtggtatttatcagaatgtgccgtgcctttgactctcagaacaataccgtgtac
tttgatgggaaatatgctagccccgacgtcttcaaatccttaggttgtgaagactttatt
agctttgtatttgaatttggaaagagtttatgttctatgcacctgactgaagatgaaatt
gcattgttttctgcatttgtcctgatgtcagcagatcgctcatggctgcaggaaaaggtc
aaaattgaaaagctgcaacagaaaattcagctagctcttcaacacgtcctacagaagaat
caccgagaagatggaatactaacaaagttaatatgcaaggtgtctacattaagagcctta
tgtggacgacatacagaaaagctaatggcgtttaaagcaatatacccagacattgtgcga
cttcattttcctccattatacaaggaattgttcacttcagaatttgagccagcaatgcag
attgatgggtaa
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