Phocoena phocoena (harbor porpoise): 136119973
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Entry
136119973 CDS
T11058
Name
(RefSeq) protocadherin beta-5
KO
K16494
protocadherin beta
Organism
pphc Phocoena phocoena (harbor porpoise)
Brite
KEGG Orthology (KO) [BR:
pphc00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
pphc04515
]
136119973
Cell adhesion molecules [BR:
pphc04515
]
Cadherins
Protocadherins
136119973
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_C_2
Cadherin_CELSR2_9th
API5
Motif
Other DBs
NCBI-GeneID:
136119973
NCBI-ProteinID:
XP_065729433
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Position
3:118595389..118597779
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AA seq
796 aa
AA seq
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METAPAKTLQKRQVIFLAILLLLWEPGSEAVRYSMPEETESGSFVATLAKDLGLSVGELT
TRGARIHYKGNKQLLQLDVTTGNLLLYEKLDREVLCGATDPCILHFQLLLENPVQFFEAD
LQLTDINDHSPEFLEREMLLKIPENVQTGTVFPLKIAQDFDIGSNTIQNYTISPNSHFHV
VTHNRGDGRKYPELVLDKPLDREEGPELSLTLTALDSGAPPRSGTTAVRIEVVDINDNAP
EFLQSVYEVQIPENSPLNSLVVAVSARDLDAGTNGNVAYALFQGDEATQPFVIDEITGEI
RLKRALDFEATRYYNVEIAATDGGGLSGKCTVVIKVVDVNDNVPELTMSTLTSSTPENSP
ETVVAVFSVSDPDSGDNGRMVCSIQNDLPFLLKPTFKNFYTLVTERPLDRESRAEYNVTI
TVTDMGTPRLKTQHNITVLVSDVNDNAPAFTQTSYTLSVRENNSPALHIGSVRATDRDEG
ANAQVTYSLLPPLDAHVPLASLVSINPDNGHLFALRSLDYEALRAFEFRVGAADRGSPAL
SSQALVRVLVADDNDNAPFVLYPLQNASAPCTELVPRAAEAGYLVTKVVAVDGDSGQNAW
LSYQLLKATEPGLFGVWAHNGEVRTARLLSERDAAKHRLLVLVKDNGEPPLSASVTLHVL
LVDGFSQPYLPAPEAEAADAVPADPLTVYLVVALASVSSLFVFSVLVFVAVRLCRRGGAT
SVGRCSVPEGPFPGHLVDVSGTGTLCQSYQYEVCLTGGSGLNEFKFLKPILPNLPIQGAG
EEIEENANLRNSSGFS
NT seq
2391 nt
NT seq
+upstream
nt +downstream
nt
atggagactgcaccagcaaaaacgctacagaaaaggcaagttatctttcttgctatatta
ttgcttttgtgggagcctggctctgaagcagttaggtattccatgccagaagaaactgaa
agtgggtcttttgtggccaccctggcaaaagacctggggctcagtgtgggggaactgacc
actcggggcgcgcgaatccattacaaaggaaataaacagctcttgcagctggatgtaacg
accgggaatttgcttctatatgaaaaactagaccgggaggtgctgtgtggggcgacagat
ccctgcatactgcatttccaactattactggaaaacccggtgcagttttttgaagctgat
ctgcagctcacagatataaatgaccattccccagagttcctcgagagggaaatgctccta
aaaatcccagaaaacgtccagacagggactgtgtttcctttgaaaatagctcaggatttt
gacataggtagcaacactattcagaattacacaatcagccccaactcccattttcatgtt
gtcactcataatcgcggagatggcagaaaatacccagagctggtgctggacaaaccgctg
gatcgggaggaagggcctgagctcagtttaaccctcacggcgctggatagtggggctccg
cccaggtccgggaccactgcagtccgcattgaagtcgtggacatcaatgacaacgcccct
gagtttttacagtcggtctatgaggtacagattccggagaacagccccctaaactcctta
gttgtcgctgtctccgcccgagatttagatgcagggacgaatgggaatgtagcctacgct
ctattccaaggtgatgaagctactcaaccatttgtaatagacgaaataacaggagaaatt
cgtctgaaaagggcattggatttcgaggcaactcgatattataacgtggagattgcagcc
acagatggcgggggcctttcaggaaaatgcactgtagttataaaggtggtggatgtgaac
gacaacgtccccgaactgaccatgtcgacgctcaccagctctaccccagaaaactccccg
gagactgtggtggctgttttcagtgtttctgatccagattccggggacaacggtaggatg
gtttgctccatccagaatgatctcccctttcttttgaaacccacattcaaaaacttttac
accctagtgaccgaaaggccactggacagagagagcagagcagaatacaacgtcaccatc
accgtcacagatatggggacaccgagactgaaaacccagcacaacataaccgtactggtg
tccgacgtcaacgacaacgcccccgccttcacccagacctcctacaccctgtccgtccgc
gagaacaacagccccgccctgcacatcggcagcgtccgcgccacagacagagacgagggc
gccaacgcccaggtcacctactcgctgctgccgcccctcgacgcgcacgtgcccctggcc
tccctggtgtccatcaacccggacaacggccacctgttcgccctgaggtccctggactac
gaggccctaagggcgttcgagttccgcgtgggcgccgccgaccgcggctcgcccgcgctc
agcagccaggcgctggtgcgcgtgctcgtggcggacgacaacgacaacgcgcccttcgtg
ctgtacccgctgcagaacgcctcggcgccctgcaccgagctggtgcccagggcggccgag
gcgggttacctggtgaccaaggtggtggcggtggacggcgactcgggccagaacgcctgg
ctttcgtaccagctgctcaaggccacggagcccgggctgttcggcgtgtgggcgcacaac
ggcgaggtgcgcacggcccggctgctgagcgagcgcgacgcagctaagcacaggctgctg
gtgctggtcaaggacaacggcgagccaccgctctcggccagcgtcacgctgcacgtgctg
ctggtggacggcttctcgcagccctacctgccggccccggaagcggaagcggcggacgcg
gtcccggccgacccgctcaccgtctacctggtggtggccttggcgtcggtgtcgtcgctc
ttcgtcttctcggtgctggtgttcgtcgcggtgcggctgtgcaggaggggcggggcgacc
tcggtgggtcgctgctcggtgcccgagggcccctttccgggccacctggtggacgtcagc
ggcacggggaccctgtgccagagctaccagtacgaggtgtgtctgacgggaggatccggg
ttaaatgagtttaaattcttgaagccgattctccccaacctcccgatccagggcgctggt
gaagaaatagaggaaaacgccaacttgcggaatagctctggattcagttag
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