Phocoena phocoena (harbor porpoise): 136120014
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Entry
136120014 CDS
T11058
Symbol
UIMC1
Name
(RefSeq) BRCA1-A complex subunit RAP80 isoform X1
KO
K20775
BRCA1-A complex subunit RAP80
Organism
pphc Phocoena phocoena (harbor porpoise)
Pathway
pphc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pphc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
136120014 (UIMC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pphc03400
]
136120014 (UIMC1)
DNA repair and recombination proteins [BR:
pphc03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-A complex
136120014 (UIMC1)
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RAP80_UIM
UIM
Rad50_zn_hook
zf-WRNIP1_ubi
UIM_2
Motif
Other DBs
NCBI-GeneID:
136120014
NCBI-ProteinID:
XP_065729495
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Position
3:complement(152911856..153103253)
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AA seq
723 aa
AA seq
DB search
MPRRKKKVKEVSEAQNLEKKDIETTSPVNVKKKRRLEDAFIVISDSDGEEPKEENGLQKM
KTKQLNRAKCLAKRKIAQMTEEEQFALAVKMSEQEAREVNSQEEEEEELLRKAIAESLNS
CRPSDASATRSRPLAAGPSSQSHQEKTTDSGTTEGIWQLVPPSLFKGSHISQGNESEERE
EPWDRTENTEEEPVSGSSGSWDQSSQPVFENENVKCFDRCTGHLAERTQCGKPQESTGKG
CAFHKAAQGRGDTSRHCLPTPADAKGLQDIGGTVHYFWGIPFCPAGVDPNQYTKVILCQL
EVYQKSLKMAQRQLLKKKGFGEPVLPRPPSLIQNECGQGDQASEKNERISEDMGDEDKEE
RQESRASVWHSKTKDFQESPIKSLKEKLLLEEEPTTSHGQSSQGLFVEETSEEGNSVPAP
QSIAALNSKRSSVLMPESSAEEITVCPETQLSSPETFDLEKEDFPGSRETVDEVRIMADK
EVDNREDAEKEIPTTAFSSSTQVSCPLCDQGFPPTKIERHAMYCNGLMGQDTVLTRRQKE
TKRKSKSESGTAAQISLDIDKNEKCYLCKSLVPFREYQCHVESCLQLARGDQGDGPEESD
RVCSTVEGKRPQRLRNPKEKGFSEGRLLSLLEQSEYKTTDAEIKTKFSETRAFRVPSPGV
EEAGCSREMQSSPAHLNLNESPIKSFVSISETTDCLVDFKKQLTVRSSSRTRTKAGRGRR
RKS
NT seq
2172 nt
NT seq
+upstream
nt +downstream
nt
atgccacggagaaagaaaaaagttaaagaagtctctgaagctcagaacctggagaagaaa
gatatagaaactaccagtcctgtcaatgtgaagaagaagcgtagacttgaggatgcattc
attgtgatatctgatagtgatggagaggaaccaaaggaggagaatggattgcagaaaatg
aagacaaaacagttgaatagagcaaagtgtttggctaaaagaaaaattgcacaaatgaca
gaagaagaacagtttgctctggctgtcaaaatgagtgaacaggaagctagggaggtgaac
agccaggaggaggaagaagaggagctcttgaggaaagccattgctgaaagcctgaatagt
tgccggccttctgatgcttctgctaccagatctcgacctctggccgctggaccatcttca
cagtcccaccaagagaaaaccacagactctgggaccactgaaggcatatggcagctggta
cctccatcactgtttaaaggctcacatatcagtcagggaaacgagtctgaggaaagagag
gagccttgggaccgcactgaaaacactgaagaggagccggtctctggcagctcaggaagc
tgggaccagtcaagccagccagtgtttgagaatgagaacgttaaatgttttgacagatgt
actggccacttggctgagcgcacacagtgtgggaagccacaggaaagtactgggaagggt
tgtgcttttcacaaagctgcccagggtaggggggacacatctaggcactgtttgcctacc
ccagcagatgccaaaggtctccaggacattgggggcactgtgcactacttctggggtatt
ccattctgccctgctggagtagaccctaaccaatataccaaggtcattctctgccagttg
gaggtttatcaaaagagcctgaaaatggctcagaggcagctcttaaaaaaaaaggggttt
ggggaaccagtgttacctagacctccttctctgatccagaatgaatgtggccaaggagat
caggctagtgaaaaaaatgaacgcatctcagaagatatgggagatgaagacaaagaggag
aggcaggagtctagggcatctgtctggcactcaaaaaccaaggatttccaagaaagccca
attaaaagcttgaaagagaaacttttgttggaggaagaaccaacaaccagtcatggtcag
tcttcccaagggctgttcgttgaagaaacttctgaagaaggaaattctgtacctgcccca
cagagcattgctgctttgaacagtaagagaagctcagtccttatgccagagagttctgca
gaggaaatcactgtgtgtcctgagacacagctaagttcccctgaaacttttgaccttgaa
aaagaagactttccaggtagcagagagaccgtggatgaagtaagaataatggcagataag
gaggttgataacagggaagatgctgagaaggaaatacctactactgccttctcatctagt
acccaggtatcctgcccactatgtgaccaaggcttcccacccacaaagatcgagcgacat
gccatgtactgcaatgggctgatgggtcaagatacagtgttgactcggagacaaaaagag
actaagagaaagagcaagagtgagagtgggacagctgctcagatttccctagacattgac
aagaatgagaagtgttatctctgtaaatccctagtcccattcagagagtatcagtgtcat
gtagagtcctgtctccagcttgcaagaggtgaccaaggagatgggcctgaagagagtgat
agagtatgctcaactgtggaggggaagcgtccacaacggctgaggaacccaaaggaaaaa
ggcttcagtgaaggccgactccttagtctcttggaacagtctgagtacaagactacagat
gcagagataaagaccaagttttcagaaacaagagccttcagggtgccttcaccaggggta
gaagaggcaggttgcagcagagagatgcagagttcccctgcacatctcaacttaaatgag
tctcccatcaagtcttttgtttctatttcagaaaccacagattgcttagtggactttaaa
aagcagcttactgtccggtcaagtagccggacacggaccaaagcaggcagaggaagaagg
aggaaatcctga
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