Phocoena phocoena (harbor porpoise): 136120026
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Entry
136120026 CDS
T11058
Symbol
XAB2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
pphc Phocoena phocoena (harbor porpoise)
Pathway
pphc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pphc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
136120026 (XAB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pphc03019
]
136120026 (XAB2)
03041 Spliceosome [BR:
pphc03041
]
136120026 (XAB2)
Messenger RNA biogenesis [BR:
pphc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
136120026 (XAB2)
Spliceosome [BR:
pphc03041
]
Complex B
Other components
Prp19-related factors
136120026 (XAB2)
Complex C
136120026 (XAB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
TPR_12
TPR_2
TPR_8
Suf
TPR_19
TPR_15
ARM_TT21
ARM_TT21_C
TPR_1
TPR_NPHP3
DHR-2_Lobe_A
Motif
Other DBs
NCBI-GeneID:
136120026
NCBI-ProteinID:
XP_065729514
LinkDB
All DBs
Position
3:167709795..167720456
Genome browser
AA seq
853 aa
AA seq
DB search
MVVTARLSRPERPDLVFEEEDLPYEEEIMRNQFSVKCWLRYIEFKQGAPKPRLNQLYERA
LKLLPCSYKLWYRYLKARRAQVKHRCVTDPAYEDVNNCHERAFVFMHKMPRLWLDYCQFL
MDQGRVTHTRRTFDRALRALPITQHSRIWPLYLRFLRSHPLPETAVRGYRRFLKLSPESA
EEYIEYLKSSDRLDEAAQRLATVVNDERFVSKAGKSNYQLWHELCDLISQNPDKVQSLSV
DAIIRGGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAIRTVMTVRDFTQVFDSYA
QFEESMIAAKMETASELGREEEDDVDLELRLARFEQLISRRPLLLNSVLLRQNPHHVHEW
HKRVALHEGRPREIINTYTEAVQTVDPFKATGKPHTLWVAFAKFYEDNGQLDDARVILEK
ATKVSFKQVDDLASVWCECGELELRHENYDQALRLLRKATALPARRAEYFDGSEPVQNRV
YKSLKVWSMLADLEESLGTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKA
YERGISLFKWPNVSDIWSTYLTKFIARYGGQKLERARDLFEQALDGCPPKYAKTLYLLYA
QLEEEWGLARHAMAVYERATRAVEPAQQYDMFNIYIKRAAEIYGVTHTRSIYQKAIEVLS
DEHAREMCLRFADMECKLGEIDRARAIYSFCSQICDPRTTGAFWQTWKDFEVRHGNEDTI
REMLRIRRSVQATYNTQVNFMASQMLKVTGSATGTVSDLAPGQSGMDDMKLLEQRAEQLA
AEAEQDQPSRAQSKILFVRSDASREELAQLAQQANPEEIELGEDEDEMDLEPNEVRLEQQ
SVPAAVFGSLKED
NT seq
2562 nt
NT seq
+upstream
nt +downstream
nt
atggtggtgacggcgcgcctctcgaggcccgagcggccggatcttgtcttcgaggaggag
gacctcccctatgaggaggaaatcatgcggaaccagttctctgtcaaatgctggctccgc
tacattgagtttaagcagggtgccccgaagcccagactcaatcagctctatgagcgggcg
ctgaagctgctgccctgcagctacaaactctggtaccgctacctgaaggcacgccgggca
caggtgaagcatcgctgtgtgactgaccctgcctacgaagatgtcaacaactgccacgag
agggcctttgtgttcatgcacaagatgccccggctgtggctagattactgccagttcctg
atggaccagggacgcgtcacacacacgcggcgcactttcgaccgtgccctccgagcgttg
cccatcacacagcactctcgtatttggcccttgtacctgcgcttcctgcgctcacacccc
ctgcctgagactgctgtgcggggctaccggcgcttcctcaagctgagccccgagagtgcc
gaggagtacatcgagtacctcaagtcgagcgaccggctggacgaggccgcacagcgcctg
gccaccgtggtgaacgacgagcgcttcgtgtccaaggccggcaagtccaactaccagctg
tggcacgagctctgcgacctcatctcccagaacccagacaaggtgcagtctctcagtgtg
gacgccatcatccgcgggggcctcacccgcttcaccgaccaactgggcaagctctggtgc
tcgctggccgactactacatccgcagcggtcacttcgagaaggctcgggacgtgtacgag
gaggccatccggaccgtgatgaccgtgcgggacttcacccaggtgttcgacagctatgcc
cagtttgaggagagcatgattgcggcgaagatggagacggcctcggagctggggcgggag
gaggaagacgacgtggacctggagctacgcctggctcgctttgagcagctcatcagccgg
cggcccctgctcctcaacagcgtcctgctgcgccagaacccgcaccacgtgcacgagtgg
cacaagcgcgtggccctgcacgagggccgcccgagggagatcattaacacgtacacggag
gccgtgcagactgtggaccccttcaaggccaccggcaagccccacaccctgtgggttgcg
ttcgccaagttttacgaggacaacgggcagctggatgacgcccgcgtcatcctggagaaa
gccaccaaggtgagcttcaagcaggtggacgacctggccagcgtatggtgcgagtgtggc
gagctggagctccggcacgagaactacgaccaggccttgcggctgctgcgtaaggcgacg
gcgctgcccgcccgccgcgccgagtacttcgacggctcagagcccgtgcagaaccgcgta
tacaagtctctgaaggtgtggtcaatgctggccgacctggaggagagcctcggcaccttc
cagtccaccaaagccgtctatgaccgcatcctggacctgcgcatcgccacaccccaaatc
gtcatcaactacgccatgttcctggaggagcacaagtactttgaagagagcttcaaggca
tacgagcgcggcatctcgctgttcaagtggcccaacgtgtccgacatctggagtacctac
ctgaccaagttcatcgcccgctacgggggccagaagctggagcgggcacgggacctgttt
gagcaggcactggatggctgccctcccaaatacgcaaagaccctgtacctgctgtacgca
cagctggaggaggagtggggcttggcccggcacgccatggccgtgtatgagcgcgccacc
agggccgtagagcccgcccagcaatacgacatgttcaacatctacatcaagcgggcggct
gagatctacggggtcacccacacccgcagcatctatcagaaggccatcgaggtgctgtca
gacgagcacgcccgtgagatgtgcctgcggttcgcggacatggagtgcaagctcggggag
atcgaccgcgcccgggccatctacagcttctgctcgcagatctgtgacccccggacgacc
ggggccttctggcagacgtggaaggacttcgaggtccggcacggcaacgaggacaccatc
cgggagatgctgcggatccgccgcagcgtgcaggccacgtacaacactcaggtcaacttc
atggcctcccagatgctcaaggtgacgggcagcgccacgggcactgtgtccgacctggcc
cctgggcagagtggcatggacgacatgaaactgctggaacagcgggccgagcagctggca
gctgaggctgagcaggaccagccctcgcgggcccagagcaagatcctgtttgtgaggagt
gacgcctcccgggaggagctggcccagctggcccagcaggccaacccggaggagatcgag
ctgggtgaggacgaggacgagatggacctggagcccaacgaggtgcgcctggagcagcag
agcgtgccggccgccgtgttcgggagcctgaaggaagactga
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