Phocoena phocoena (harbor porpoise): 136120265
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Entry
136120265 CDS
T11058
Name
(RefSeq) protocadherin beta-4-like
KO
K16494
protocadherin beta
Organism
pphc Phocoena phocoena (harbor porpoise)
Brite
KEGG Orthology (KO) [BR:
pphc00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
pphc04515
]
136120265
Cell adhesion molecules [BR:
pphc04515
]
Cadherins
Protocadherins
136120265
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_C_2
Cadherin_CELSR2_9th
Big_9
API5
Motif
Other DBs
NCBI-GeneID:
136120265
NCBI-ProteinID:
XP_065729776
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Position
3:118580780..118583155
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AA seq
791 aa
AA seq
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METLERIQQNRQVITFILILFLSQAHPAPIRYSVLEETESVSFIAHLTTDLGLGIGELAA
RSAQVVCDDDKQRLLLDRQTGDLLLREKLDREDICGPVEPCVLHFQVFLETPVQFFEGEL
LIQDINDHSPVFPNREMLLKIPENSQPGTVFPLKLAQDLDVGSNGLQKYTISPNSHFHVV
TRNHSEGNKYPDLVQDKALDREEQPEFSLTLMALDGGSPPRSGTSMLRILIMDVNDNAPE
FVHTPYEVQVLENIPLDSLILTVLARDVDAGNFGTVSYRLFQASEEIKQTFSINEVTGEI
RLTKKLDFEQIKSYHVEIEATDGGGLSGKGTVAIEVVDVNDNAPEITIPSLTCSIPENAP
ETVVSIFRIRDRDSGDNGRMVCSIPGNLPFILKPTLKNFYTLVTESPLDRESRAEYNITI
TVTDMGTPRLKTEHNITVLVSDVNDNAPAFTQTSYTLSVRENNSPALHIGSVRATDRDEG
ANAQVTYSLLPTLDAHVPLASLVSINPDNGHLFALRSLDYEALRAFEFRVGAADRGSPAL
SSQALVRVLVVDDNDNAPFVLYPLQNASAPCTELVPRAAEAGYLVTKVVAVDGDSGQNAW
LSYQLLKATEPGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPLSASVTLHVL
LVDGFSQPYLPAPEAAAADAAPTTPLTAYLVVALASVSSLFVFSVLVFVAVRLCRRGGAA
SVGRCSVPEGPFPGHLVDVSGTGTLSQSYQYEVCLTGDHETGEFKFLKPVFPKLLVQNTE
REIKRKPQLQE
NT seq
2376 nt
NT seq
+upstream
nt +downstream
nt
atggagacgctagagagaattcaacaaaacaggcaagtgataacatttattttgatacta
ttcttatctcaggctcaccctgcgcctattcgttattctgtgctggaagaaacagagagc
gtctcctttatagcccatttgaccacggacctgggcctgggaattggggagctggccgcc
cggtcggcccaggtagtgtgtgacgatgacaagcagcgcttgctgctagatcgccagact
ggagatttgcttttgagggagaaactagaccgggaagatatatgtggccccgttgaaccc
tgtgtgctgcatttccaagtgttcctggaaactccggtgcaattttttgaaggagaacta
ttaatccaggacataaatgaccactccccagtattcccgaatagggaaatgctcctgaaa
ataccggaaaacagccagccagggactgtttttccgttgaaattagctcaggatttggat
gtgggcagcaatggtcttcaaaaatacactatcagccccaattctcattttcacgttgtc
actcgaaatcatagtgagggcaataaatatccagatttggtgcaggacaaagcactggat
cgagaggagcagcctgagttcagcttaaccctcatggcgctggatggcgggtctccacct
aggtctggcaccagcatgttacgaatcctgatcatggatgtcaatgacaatgctcctgag
tttgtgcacactccatatgaggtgcaggttctggaaaacatccccctagactccctaata
cttactgttttagctagggatgtagatgctggaaactttgggactgtttcctaccgtttg
ttccaagcatcagaggaaattaaacaaactttctcaataaatgaagtcacaggagaaatc
cgactgacaaagaaattggattttgaacaaattaaatcttaccacgtggaaattgaggct
acagatggaggaggcctttccggaaaaggcactgtagccatagaggtggtagatgtgaat
gacaacgcccctgaaattaccataccttcactcacctgctccatcccagaaaatgctcct
gagactgtagtctccatcttccgaattcgagatagagactccggagacaatggaaggatg
gtttgctctattccaggtaatctgccattcattctaaaaccgactttaaagaatttctac
accctggtaacagagagccctctggacagagagagcagagccgagtacaacatcaccatc
accgtcacagatatgggaacccccaggctgaaaaccgagcacaacataaccgtgctggtg
tccgacgtcaacgacaacgcccccgccttcacccagacctcctacaccctgtccgtccgc
gagaacaacagccccgccctgcacatcggcagcgtccgcgccacagacagagacgagggc
gccaacgcccaggtcacctactcgctgctgccgaccctcgacgcgcacgtgcccctggcc
tccctggtgtccatcaacccggacaacggccacctgttcgccctgaggtccctggactac
gaggccctgcgggcgttcgagttccgcgtgggcgccgccgaccgcggctcgcccgcgctc
agcagccaggcgctggtgcgcgtgctcgtggtggacgacaacgacaacgcgcccttcgtg
ctgtacccgctgcagaacgcctcggcgccctgcaccgagctggtgcccagggcggccgag
gcgggttacctggtgaccaaggtggtggcggtggacggcgactcgggccagaacgcctgg
ctgtcgtaccagctgctcaaggccacggagcccggcctgttcggcgtgtgggcgcacaac
ggcgaggtgcgcacggcccggctgctgagcgagcgcgacgcggccaagcacaggctggtg
gtgctggtcaaggacaacggcgagccgccgctctcggccagcgtcacgctgcacgtgctg
ctggtggacggcttctcgcagccctacctgccggccccggaagcggcagcggcggacgcg
gccccgaccacccctctcaccgcctacctggtggtggccttggcgtcggtgtcgtcgctc
ttcgtcttctcggtgctggtgttcgtcgcggtgcggctgtgcaggaggggcggggcggcc
tcggtgggtcgctgctcggtgcccgagggcccctttccgggccacctggtggacgtcagc
ggcacggggaccctgtcccagagctaccagtacgaggtgtgtctgacgggagaccatgaa
actggtgagttcaaattcctgaagccagtatttcccaaactcttggttcagaacacagag
agagaaattaaaagaaagccccaactgcaggaataa
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