Phocoena phocoena (harbor porpoise): 136121080
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Entry
136121080 CDS
T11058
Symbol
DROSHA
Name
(RefSeq) ribonuclease 3 isoform X1
KO
K03685
ribonuclease III [EC:
3.1.26.3
]
Organism
pphc Phocoena phocoena (harbor porpoise)
Pathway
pphc03008
Ribosome biogenesis in eukaryotes
pphc05205
Proteoglycans in cancer
Brite
KEGG Orthology (KO) [BR:
pphc00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
136121080 (DROSHA)
09160 Human Diseases
09161 Cancer: overview
05205 Proteoglycans in cancer
136121080 (DROSHA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pphc03019
]
136121080 (DROSHA)
03009 Ribosome biogenesis [BR:
pphc03009
]
136121080 (DROSHA)
03036 Chromosome and associated proteins [BR:
pphc03036
]
136121080 (DROSHA)
Enzymes [BR:
pphc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.3 ribonuclease III
136121080 (DROSHA)
Messenger RNA biogenesis [BR:
pphc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
136121080 (DROSHA)
Ribosome biogenesis [BR:
pphc03009
]
Eukaryotic type
90S particles
RNase
136121080 (DROSHA)
Prokaryotic type
rRNA processing factors
136121080 (DROSHA)
Chromosome and associated proteins [BR:
pphc03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Microprocessor complex
136121080 (DROSHA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Helical_CED_Drosha
Ribonuclease_3
Ribonucleas_3_3
dsrm
RM44_endonuclase
DSRM_MRPL44
5_3_exonuc
YcaO
Motif
Other DBs
NCBI-GeneID:
136121080
NCBI-ProteinID:
XP_065730950
LinkDB
All DBs
Position
3:complement(26079752..26209327)
Genome browser
AA seq
1373 aa
AA seq
DB search
MQGSTCHRMSFHPGRGCPRGRGGHGSRPSAPAFRPQNLRLLHPQQPPVQYQYEPPSAPST
TFSNAPAPNFLPPRPDFVPFPPPMPPSAQGPLPPCPIRPPFPSHQMRPPFPVPPCFPPMP
PPMPCPNNPPVPGAPPGQGTFPFMMPPPSMPHPPPPPVVPQQVNYQYPPGYSHHSFPPPN
FNSFQNNLSSFSPSANNSSSPHFRHLPPYPLPKAPSERRSPERLKHYDDHRRRDHSHGRG
ERHRSLDRRERGRSPDRRRQDSRYRSDYDRGRTPSRHRSYERSRERERERHRHRDSRRSP
SLERSYKKEYKRSGRSYGLPGASEPAGCTPELSGEIIKNTDSWAPPPETLNHRSPSREKK
RARWEEEKDRWGDNQSSGKEKNGSSVKEREPEESLPDRNEEDDDELLKPVWIRCTHSESY
YSSDPMDQVGDSTVVGTSRLRDLYDKFEEELGSRQEKAKAARPPWEPPKTKLDEDLESSS
ESECESDEDSTCSSSSDSEVFDVIAEIKRKKAHPDRLHDELWYNDPGQMNDGPLCKCSAK
ARRTGIRHSIYPGEEAIKPCRPMTNNAGRLFHYRITVSPPTNFLTDRPTVIEYDDHEYIF
EGFSMFAHAPLTNIPLCKVIRFNIDYTIHFIEEMMPENFCVKGLELFSLFLFRDILELYD
WNLKGPLFEDSPPCCPRFHFMPRFVRFLPDGGKEVLSMHQILLYLLRCSKALVPEEEIAN
MLQWEELEWQKYAEECKGMIVTNPGTKPSSVRIDQLDREQFNPDVITFPIIVHFGIRPAQ
LSYAGDPQYQKLWKSYVKLRHLLANSPKVKQTDKQKLAQREEALQKIRQKNTMRREVTVE
LSSQGFWKTGIRSDVCQHAMMLPVLTHHIRYHQCLMHLDKLIGYTFQDRCLLQLAMTHPS
HHLNFGMNPDHARNSLSNCGIRQPKYGDRKVHHMHMRKKGINTLINIMSRLGQDDPTPSR
INHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRF
MLYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLNY
PLHPLQLQEPNTDRQLIETSPVLQKLTEFEDAIGVIFTHVRLLARAFTLRTVGFNHLTLG
HNQRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAI
TNDKTKRPVALRTKTLADLLESFIAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDP
KSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAE
MGAAMDALEKYNFPQMAHQKRFIERKYRQELKEMRWEREHQEKEPDETEDIKK
NT seq
4122 nt
NT seq
+upstream
nt +downstream
nt
atgcaaggcagtacctgtcatagaatgtcattccatccaggacgagggtgtccccgaggg
cgaggaggacatggatccagaccctcagcaccagccttcaggccccaaaatctgagactg
cttcaccctcagcagcctcctgtgcaataccaatacgaacctccgagcgccccttccacc
acgttctccaacgctccagctcccaatttcctgcctccgcgaccagacttcgtgcccttc
cctccacccatgcctccatcagcacaaggcccccttcccccctgcccgatccggcccccc
ttccccagccaccagatgaggcccccctttcccgtgcctccctgttttcctcccatgccg
cctccgatgccctgtcccaataaccccccagtccctggagcacctcctggacagggcact
ttccccttcatgatgccccctccatccatgccccaccccccgcctcctcccgtagtgcct
cagcaggtcaattaccagtaccctccgggatactcgcaccacagtttcccacctcccaat
tttaatagcttccagaacaacctcagttccttctcacccagtgctaataatagcagtagc
cctcattttaggcacctccctccatacccactcccaaaggctcccagtgagaggaggtcc
ccagaaaggctcaagcactatgatgatcacagacgccgggatcacagtcacgggaggggc
gagaggcatcgttccttggatcggcgggagcgaggccgaagtcctgacaggagaaggcag
gacagccgctacagatccgattacgaccgggggaggacaccgtcccgccataggagctat
gagcggagcagagagcgggaacgggagagacacaggcaccgggacagccgaagatcaccg
tctctggaaaggtcctacaaaaaagagtataagagatctggaaggagttatggtttgccg
ggtgcttctgaacctgctggatgcacaccagaattatctggggagattattaaaaataca
gattcttgggccccacccccggagactttgaatcatcgctccccaagtagggagaagaag
agagctcgttgggaggaagaaaaagacagatggggtgacaaccagagctccggcaaagag
aagaatggtagctcagtcaaagaaagagagccggaggagtcgctgcccgacagaaatgag
gaggacgacgacgagctccttaagcctgtgtggatccgatgcacccactcagaaagctac
tactccagtgaccccatggatcaggtgggagactctacggtagttggaacaagtagactc
cgcgacttatatgacaaatttgaggaagagttggggagcaggcaagagaaggccaaagct
gctagacccccatgggagcctcccaagacgaagctagatgaagatttagagagttccagt
gaatccgaatgtgagtccgatgaggacagcacctgttctagcagctcagactctgaagtt
ttcgacgtcattgcagaaatcaaacgcaaaaaggcccatcctgaccgacttcacgatgaa
ctttggtacaatgacccaggccagatgaatgatggcccactctgcaaatgcagcgcaaaa
gcgagacgcacgggaatcaggcacagcatttatcccggagaagaggccatcaagccctgt
cgtcctatgaccaacaatgctggcagacttttccactatcgaattacagtctcacctcct
acaaactttttaactgacaggccaactgttatcgaatatgatgatcatgagtatatcttt
gaaggattttctatgtttgcacacgcccccctgaccaatattccactgtgtaaagtaatt
agattcaacatagactacacgattcatttcattgaggagatgatgcctgagaatttttgt
gtgaaaggacttgaactcttttcattatttctattcagagatattttggaattgtatgac
tggaatcttaaaggtcctttgtttgaagacagtcctccctgctgcccaagatttcatttc
atgccacgttttgtaagatttcttccagacggaggaaaggaagtactgtccatgcaccag
atcctcctttacttattacggtgtagcaaagccctggttcccgaagaggagatcgccaat
atgcttcagtgggaagaactcgagtggcagaaatatgcggaagaatgcaaaggcatgatt
gtcaccaaccctgggacgaaaccaagctctgtccgcatcgatcaactggatcgtgaacag
ttcaaccccgatgtgattacttttcctattattgtccactttgggatacgccctgcacag
ttgagttatgctggagacccacagtaccagaaactgtggaagagttatgtaaaacttcgc
cacctcctagcaaatagccctaaagtcaaacaaactgacaagcagaagctggcacagagg
gaggaagcactccagaaaatacgacagaagaacaccatgaggcgagaagtaacagtggag
ctgagtagccaaggattctggaaaactggcatccgttctgatgtctgtcagcatgcaatg
atgctgcctgttttgacccatcatattcgataccaccagtgcctaatgcatctggacaag
ttgataggatatactttccaagatcgttgtctgttacagctggcaatgacccacccaagt
catcacttaaattttggaatgaatcctgatcatgccaggaattctttgtctaactgtgga
attcggcaacccaaatatggagatagaaaagttcatcacatgcacatgcggaaaaaagga
attaacacattaataaatattatgtcacgccttggccaagatgacccaactccctcaagg
attaatcataatgaacggttggagttcctgggtgatgctgttgttgaatttctgaccagt
gtccatttgtactatttgtttcctagtctagaagagggaggattagcaacctatcggact
gccatcgttcagaaccagcaccttgccatgctagcaaagaaactggaactggatcgattt
atgctttatgctcatggacctgacctttgtagagaatcagaccttcgacatgccatggct
aattgttttgaagcattaataggagctgtttacttggagggaagcctggaggaagccaaa
cagttatttggacgcttactctttaatgatccggacttgcgcgaagtctggctcaattat
cctctccacccactccagcttcaagagccaaatactgatcgacaacttattgagacttct
ccagttctgcagaaacttactgaatttgaagacgcaattggagtaatttttacccacgtt
cgacttttggcaagagcattcacattgagaactgtgggatttaaccatctgaccctaggc
cacaatcagaggatggaattcctcggtgactccataatgcagctggtagccacggagtac
ttattcattcatttcccagatcatcatgaaggacacttaactctgttgcgaagctctttg
gtgaataacagaactcaagccaaggtagcagaggaattgggcatgcaggaatatgccatc
accaacgacaagaccaagaggcctgtggcccttaggaccaagaccttggccgaccttttg
gaatcatttatcgcagctctgtacattgataaggatttggaatatgttcatactttcatg
aatgtttgtttctttccacgattaaaagagttcattttgaatcaggattggaatgacccc
aaatcccagcttcagcagtgttgcttgacacttaggacagaaggaaaagagccagacatt
cctctgtacaagactctgcagacagtggggccatcccatgctaggacctataccgtggct
gtctacttcaagggagaaagaatcggctgtgggaaaggcccaagtattcagcaagcagaa
atgggagcagcaatggatgcacttgaaaaatataactttccccagatggcccatcagaag
cggttcattgaacggaaatacagacaagagttaaaagaaatgaggtgggaaagagagcat
caagagaaagagccagatgagactgaagacataaagaaataa
DBGET
integrated database retrieval system
