Phocoena phocoena (harbor porpoise): 136121189
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Entry
136121189 CDS
T11058
Symbol
SLIT3
Name
(RefSeq) slit homolog 3 protein isoform X1
KO
K06850
slit 3
Organism
pphc Phocoena phocoena (harbor porpoise)
Pathway
pphc04360
Axon guidance
Brite
KEGG Orthology (KO) [BR:
pphc00001
]
09150 Organismal Systems
09158 Development and regeneration
04360 Axon guidance
136121189 (SLIT3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pphc00536
]
136121189 (SLIT3)
Glycosaminoglycan binding proteins [BR:
pphc00536
]
Heparan sulfate / Heparin
Axon guidance molecules
136121189 (SLIT3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_4
EGF
LRR_5
hEGF
Laminin_G_2
LRR_9
LRRNT
Laminin_G_1
LRRCT
EGF_TEN
LRR_14
LRR_EndoS
EGF_Teneurin
EGF_3
EGF_DL_JAG
LRR_NXF1-5
Motif
Other DBs
NCBI-GeneID:
136121189
NCBI-ProteinID:
XP_065731087
LinkDB
All DBs
Position
3:complement(145397073..146008411)
Genome browser
AA seq
1539 aa
AA seq
DB search
MAPGRTEEGAAVRARLVLAFALASVLSGPRAAACPTKCTCSAASVDCHGLGLRAVPRGIP
RNAERLDLDRNNITRITKTDFAGLKNLRVLHLEDNQVSVIERGAFQDLKQLERLRLNKNK
LQVLPELLFQSNPKLTRLDLSENQILGIPRKAFRGIADVKNLQLDNNRISCIEDGAFRAL
RDLEILTLNNNNISRILVTSFNHMPKIRTLRLHSNHLYCDCHLAWLSDWLRQRRTIGQFT
LCMAPVHLRGFNVADVQKKEYVCPGPHSEPPSCNANSISCPSACTCSNNIVDCRGKGLME
IPANLPEGIVEIRLEQNSIKSIPAGAFTQYKKLKRIDISKNQISDIAPDAFQGLKSLTSL
VLYGNKITEIAKGLFDGLVSLQLLLLNANKINCLRVNTFQDLQNLNLLSLYDNKLQTISK
GLFAPLQAIQTLHLAQNPFVCDCHLKWLADYLQDNPIETSGARCSSPRRLANKRIGQIKS
KKFRCSGSEDYRSRFSSECFMDLVCPDRCRCEGTIVDCSNQKLARVPSHLPEYVTDLRLN
DNEISVLEATGIFKKLPNLRKINLSNNRIKEVREGAFDGAASLQELMLTGNQLETVHGRV
FRGLSGLKTLMLRSNLISCVSNDTFAGLSSVRLLSLYDNRITTITPGAFTTLVSLSTINL
LSNPFNCNCHLAWLGKWLRKRRIVSGNPRCQKPFFLKEIPIQDVAIQDFTCEGNDESSCR
LGPRCPEQCTCMETVVRCSNKGLRTLPKGIPKDVTELYLEGNHLTAVPKELPTLRHLTLI
DLSNNSIGMLTNYTFSNMSHLSTLILSYNRLRCIPIHSFNGLRSLRVLTLHGNDISSVPE
GSFNDLTSLSHLALGTNPLHCDCSLRWLSEWVKAGYKEPGIARCSSPEPMADRLLLTTPT
HRFQCKVSLLGDLPPTLWFCCPGPVDINIVAKCNACLSSPCKNNGTCSQDPVEQYRCACP
FGYKGKDCTVPINTCLQNPCLHGGTCHLSESHSDGFSCSCPLGFEGQRCEINPDDCEDSD
CENNATCVDGINTYVCVCPPDYTGELCDEVIDHCVPGMNLCQHEAKCVSLDRGFRCECLP
GYSGKLCEVNSDDCAAHRCRHGAQCVDAVNGYTCICPQGFSGLYCEHPPPMVLLQTSPCD
QYECQNGAQCIVVQQEPTCRCPPGFAGPRCEKLITVNFVGKDSYVELASAKVRPQANISL
QVATDKDNGILLYKGDNDPLALELYQGHVRLVYDSLSSPPTTVYSVETVNDGQFHSVELV
MLNQTLNLVVDKGAPKSLGKLQKQPTVGINSPLYLGGIPTSTGLSALRQGVDRPLGGFHG
CIHEVRINNELQDFKALPPQALGVSPGCKSCSVCRHGLCRAVEKDSVVCECHPGWTGLLC
DQEARDPCLGHSCSQGRCVATGTSYVCKCAEGYRGALCDHKNDSANACSAFKCHHGQCHV
SDQGEPYCLCQPGFSGEHCEQETPCLGGVVREVIRRQKGYASCATASKVPLMECHGGCGP
QCCQPTRSKRRKYVFQCTDGSSFVEEVERHLECGCRPCS
NT seq
4620 nt
NT seq
+upstream
nt +downstream
nt
atggcccccgggcggacggaggaaggcgccgcggtgcgcgcccgcctggtgctggccttc
gcgctggcgagtgttctgagcggcccccgcgctgccgcctgccccaccaagtgtacctgc
tccgccgccagcgtggactgccacgggctgggcctccgggcggttccccggggcatcccc
cgcaacgccgagcgccttgacctggacagaaataacatcaccaggatcaccaagaccgac
ttcgctggactcaagaacctccgagtcttgcatctggaagacaaccaggtcagcgtcatc
gagagaggcgccttccaggatctgaagcagctggagcgattgcgcctgaacaagaataaa
ctccaggtcctcccggaactgcttttccagagcaacccgaagctcaccagactagatctg
agcgaaaaccagatcctggggatcccgaggaaggcgttccgaggcatcgcagacgtgaag
aacctgcaactagacaacaaccgcatcagctgcattgaagatggagccttccgagcgctg
cgtgatttagagatcctcactctcaataacaacaacattagccgcatcctggtcaccagc
ttcaaccacatgccgaagattcgaaccttgcgcctccactccaaccacctgtactgcgac
tgtcacctggcctggctctcggattggctgcgacagcggcggaccattggccagttcact
ctctgcatggcacctgtgcacctgaggggcttcaacgtggcggacgtgcagaagaaggag
tacgtgtgcccaggcccgcactcagagcctccatcctgcaatgccaactccatctcctgc
ccttcagcctgcacttgcagtaataacatcgtggactgtcgagggaagggcttgatggag
atccccgccaacttgccagagggcatcgttgaaatacgtctggaacagaactccatcaaa
tccatccctgccggagccttcacccaatacaagaaactgaagcgaatagacatcagcaag
aatcagatctcggacatcgctccagacgccttccagggtctgaaatcgctcacatctctg
gtgctctatgggaacaagatcaccgagattgccaagggattgtttgacgggctggtgtcc
ctacagctgctgctcctcaatgccaacaagatcaactgcctacgggtgaacacgtttcag
gacctgcagaacctcaacctgctctccctatacgacaacaagcttcaaaccatcagcaag
gggctctttgcccctctgcaggccatccagacgctccacttagcccaaaacccatttgtg
tgcgactgccacttgaagtggctggccgactaccttcaggacaaccccatcgagaccagc
ggggcccgctgcagcagcccgcgccggctggccaacaagcgcatcggccagatcaagagc
aagaagttccgctgctcaggctcggaggattaccgcagcaggttcagcagcgagtgcttc
atggacctcgtgtgcccggacaggtgccgctgcgagggcaccatcgtggactgctccaac
cagaagctggcccgtgtcccaagccacctccccgaatacgtcaccgacctccgactgaac
gacaatgagatatctgttctagaggccactggtatcttcaagaagttgcccaacctgcgg
aaaataaacttgagtaacaataggatcaaggaggtgagagagggtgcctttgatggagct
gccagcctgcaggagctgatgctgacggggaaccagctggaaacagtgcatgggcgcgtg
ttccgtggcctcagcggcctcaagaccttgatgctgaggagtaacctgatcagctgtgtg
agcaatgacacctttgctggcctgagttcagtgaggctgctgtccctctacgacaatcgg
atcaccaccatcacccccggagccttcaccacgcttgtctccctgtccaccataaacctc
ctgtccaaccccttcaactgcaactgccacctggcctggctcggcaagtggttgaggaag
aggcgaatcgtaagtgggaacccccggtgccagaagcccttcttcctcaaggagattccc
atccaggacgtggccatccaggacttcacctgtgaaggcaatgatgagagcagctgccgg
ctggggccgcgctgccccgagcagtgcacctgcatggagacggtggtgcgatgcagcaac
aaggggctccgcaccctccccaaaggcatccccaaggacgtgacggagctgtacctggaa
ggaaaccacttaacagccgtgcccaaggagctgcccaccctccgacacctgacactcatt
gacctgagcaacaacagcattggcatgctgaccaactacaccttcagtaacatgtctcac
ctctccaccctgatcctgagctacaaccggctgcgatgcatccccatccactccttcaat
gggctgcggtccctccgagtgctaaccctccatggcaacgacatctccagcgttcccgaa
ggctccttcaatgacctgacctctctttcccatctggcactgggaaccaacccactccac
tgcgactgtagcctgcgttggctctcggagtgggtgaaggccgggtacaaggagcctggc
atcgcccgctgcagtagccccgagcccatggctgaccgactcctactcaccacccccacc
caccgcttccagtgcaaagtgagcctacttggggacctgccaccaacactctggttttgc
tgtccagggccagtggacatcaacattgtggccaagtgcaatgcctgcctttccagcccg
tgcaagaacaacgggacatgtagccaggatcccgtggagcagtaccgctgcgcctgcccc
tttggctacaagggaaaagactgcactgtgcccatcaacacctgcctccagaacccctgt
ctgcacggaggcacctgccacctgagcgagagccacagcgatgggttcagctgctcctgc
cccctgggcttcgaggggcagcggtgtgagatcaacccagatgactgcgaggacagcgac
tgtgagaacaacgccacctgtgtggacgggatcaacacctatgtgtgtgtgtgcccacca
gactacacaggtgagctgtgcgacgaggtgatcgaccactgcgtgcccgggatgaacctc
tgtcagcacgaggcaaagtgcgtctccctggacagaggattcaggtgcgaatgtctccct
ggctacagcgggaagctctgcgaggtgaacagtgatgactgcgcagcccacaggtgccgc
catggggcccagtgcgtggatgcggtcaacggctacacgtgcatctgcccccagggcttc
agcgggctctactgcgagcaccccccgcccatggtcctgctacagacaagcccctgcgac
cagtacgagtgccagaacggggcccagtgcatcgtggtgcagcaggagcccacctgccgc
tgccccccgggcttcgctggcccaaggtgcgagaagctcatcaccgtcaacttcgtgggc
aaggactcctacgtggaactggcctccgccaaggtccggccccaggccaacatctccctg
caggtggccacggacaaggacaacggcatccttctctacaagggagacaatgaccccctg
gcactggagctgtaccagggccacgtgaggctcgtctacgacagcctgagctccccgccg
accacggtgtacagcgtggagaccgtgaatgacgggcagtttcacagtgtggagctggtg
atgctaaaccagaccctgaacctggtggtggacaaaggagcccctaaaagcctggggaag
ctccagaagcagccaacagtgggcatcaacagccccctctaccttggaggcatccccacc
tccacaggcctctcggccttgcgccagggcgtggaccggccgctgggcggcttccacggc
tgcatccacgaggtgcgcatcaacaacgagctgcaggacttcaaggccctcccgccgcag
gccctgggcgtctcgccgggctgcaagtcctgcagcgtgtgcaggcacggcctgtgccgt
gccgtggagaaggacagcgtggtgtgcgagtgccacccaggctggacaggcctgctgtgc
gaccaggaggcccgcgacccctgcctcggccacagctgcagccaggggagatgcgtggca
actgggacctcatatgtgtgcaagtgcgccgagggctacagaggggccttgtgtgaccac
aagaatgactctgccaacgcctgctcagccttcaagtgtcaccacgggcaatgccacgtc
tcagatcaaggggagccctactgcctgtgccagcccggctttagtggggaacactgcgaa
caagagactccatgcctggggggggtagtccgagaggtgatccgccgccagaaaggttat
gcctcgtgtgccacggcctccaaggtgcccttaatggaatgtcacgggggctgcggtccc
cagtgctgccagcccacccgtagcaagcggcggaaatacgtgttccagtgcacagacggc
tcctcgttcgtggaagaggtggagagacatttagagtgcggctgccgcccgtgttcctaa
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