Phocoena phocoena (harbor porpoise): 136122270
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Entry
136122270 CDS
T11058
Symbol
NCSTN
Name
(RefSeq) nicastrin isoform X1
KO
K06171
nicastrin
Organism
pphc Phocoena phocoena (harbor porpoise)
Pathway
pphc04330
Notch signaling pathway
pphc05010
Alzheimer disease
Brite
KEGG Orthology (KO) [BR:
pphc00001
]
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
136122270 (NCSTN)
09160 Human Diseases
09164 Neurodegenerative disease
05010 Alzheimer disease
136122270 (NCSTN)
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Gene cluster
GFIT
Motif
Pfam:
Nicastrin
Ncstrn_small
Peptidase_M28
Motif
Other DBs
NCBI-GeneID:
136122270
NCBI-ProteinID:
XP_065732275
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Position
1:116541962..116556311
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AA seq
709 aa
AA seq
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MATDGGGCEADLGSRSLLRLVSFCVLLAGLCEGNSVEKKIYIPLNKTAPCVRLLNATHQI
GCQSSVSGDTGVIHVVQKEEDLQWVLTDGPNPPYVVLLEGTLFTRNLMEKLKGRTSRIAG
LAVSLAKPSPASGFSPSVQCPNDGFGVYSNSYGPEFAHCREIAWNPLGDGLAYEDFSFPI
FLLEDENETNVIKQCYRDHNLSQNGSAPAFPLCAMQLFSHMHAVISTVTCMRRSFIQSSF
SINPEIVCDPLSDYNVWSMLKPVNISETLEPDDKVVVAATRLDSRSFFWNVAPGAESAVA
SFVTQLAAAEALQKAPDVTTLPRNVMFVFFQGETFDYIGSSRMVYDMKNGKFPVQLENID
SFVELGQVALRNSLELWMHTDPMSQKNETVQNQVEELLTTLEKSGAGVPTVVLRRLSRSQ
PLPPSSLQRFLRAQNISGVVLADHSAVFQNHYYQSIYDTAENINVTYPEGQSPEEDLNFV
TDTAKALAGVATVLGRALYQLAGGTNFSHTIQADPQTVTRLLYGFLVRANNSWFQSILRP
DLRSYLGDGPLQHYIAVSSPTNTTYVVQYALANLTGKVIDLTREQCQDPSKVPTENKDLY
EYAWVQGPLNSNETDRLPRCVRSTARLARALSPAFELKQWGSTEYSTWTESRWKDIRARI
FLIASKELEFITLMVGFGVLVFSLVVTYCINAKADVLFIAPREPGSVSY
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
atggccacagatggcggcggctgtgaggccgacctgggaagtcggagtctccttcgcctt
gtgtctttctgcgtcctactggcaggtttgtgtgaaggaaactcagtggagaagaagatc
tacatccccttaaataaaacagctccctgtgtccgtctgctcaacgctactcatcagatt
ggctgccagtcttccgttagtggggacacaggggttatccacgtagtacagaaggaagaa
gacctacagtgggtgttgaccgatggccctaaccccccttatgtggttctgctggagggc
acgctctttaccaggaatctgatggagaagctgaaggggagaaccagccgaattgctggt
cttgcagtgtctttagccaagcccagtcctgcctcaggcttctctcctagtgtgcagtgt
cccaatgatgggtttggtgtttactccaactcctatgggccagagtttgctcactgcaga
gagatagcatggaaccccctgggcgatggcttggcttatgaagacttcagtttccccatc
ttccttcttgaagatgaaaatgaaaccaatgtcattaagcagtgctaccgcgatcacaac
ctgagtcagaacggctcggcaccggccttcccactgtgcgccatgcagctcttttcacac
atgcacgccgtcatcagtaccgtcacctgcatgcgacgcagctttatccagagctccttc
agcatcaacccagaaatcgtctgtgaccccctgtctgactacaacgtatggagcatgctt
aagcctgtaaatatctctgagacattggagcccgatgacaaggttgtggtggctgccacc
cggctggacagtcgttcctttttctggaatgtggccccaggggctgaaagtgccgttgcc
tccttcgtcactcagctggctgcagctgaagctctgcagaaggcacccgatgtgaccacc
ctgccccgcaatgtcatgtttgtcttcttccaaggggaaacttttgactacattggcagc
tcaagaatggtctacgatatgaaaaatggcaagtttcctgtgcagttagagaacattgac
tcattcgtggagctgggacaggtggccttaagaaattcactagagctttggatgcacaca
gaccccatgtctcagaaaaatgaaactgtacagaaccaggtggaggagctcctgaccacc
ctggagaagagcggtgctggcgtccctactgtagtcctcaggaggctgagtcggtcccag
cctctcccaccatcttctctgcagcgatttcttcgagctcaaaacatctctggcgtggtt
cttgctgaccactctgctgtcttccaaaaccactattaccagagcatttacgacactgct
gagaacattaatgttacctaccctgaagggcagagccctgaagaggacctgaactttgtg
acagatactgccaaggctctggcaggtgtggccacggtgctgggacgtgcactgtaccag
ctcgcaggaggaaccaacttcagccacaccattcaggccgatccccaaacggttacccgc
ctgctctatgggttcctggttagagccaacaactcgtggttccagtctatcctcaggccg
gacctaaggtcctacttgggtgatgggcctcttcagcattacatcgccgtctccagcccc
accaacaccacttacgttgtacagtatgccttggcaaatttgactggcaaggtgatcgac
cttacccgagagcagtgccaggatccgagtaaagtccccactgaaaacaaggatctgtac
gagtacgcttgggttcagggccctttgaattccaatgagacagaccggcttccccggtgt
gtgcgttccacggcacgactcgccagggccttgtcccctgctttcgaattgaagcagtgg
ggctctactgaatactctacatggactgagagccgctggaaagacatccgcgcccggata
tttctgatagccagcaaagagctggagtttatcaccctgatggtgggcttcggcgtcctc
gtcttctctcttgtcgtcacctactgcatcaatgccaaagccgatgtccttttcattgct
ccccgggaaccaggatctgtgtcttactga
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