Phocoena phocoena (harbor porpoise): 136122734
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Entry
136122734 CDS
T11058
Symbol
TRPC1
Name
(RefSeq) short transient receptor potential channel 1 isoform X1
KO
K04964
transient receptor potential cation channel subfamily C member 1
Organism
pphc Phocoena phocoena (harbor porpoise)
Pathway
pphc04360
Axon guidance
pphc04724
Glutamatergic synapse
pphc04726
Serotonergic synapse
pphc04929
GnRH secretion
pphc04972
Pancreatic secretion
Brite
KEGG Orthology (KO) [BR:
pphc00001
]
09150 Organismal Systems
09152 Endocrine system
04929 GnRH secretion
136122734 (TRPC1)
09154 Digestive system
04972 Pancreatic secretion
136122734 (TRPC1)
09156 Nervous system
04724 Glutamatergic synapse
136122734 (TRPC1)
04726 Serotonergic synapse
136122734 (TRPC1)
09158 Development and regeneration
04360 Axon guidance
136122734 (TRPC1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
pphc04040
]
136122734 (TRPC1)
Ion channels [BR:
pphc04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
136122734 (TRPC1)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
TRP_2
Ion_trans
Ank_2
Ank_4
LHD_TRPY1
MTR4-like_stalk
RIN1
Motif
Other DBs
NCBI-GeneID:
136122734
NCBI-ProteinID:
XP_065732880
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Position
4:25021687..25084798
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AA seq
760 aa
AA seq
DB search
MMAALYPSTDLSGASSSSLPSSPSSSSSPNEVMALKDVREVKEENTLNEKLFLLACDKGD
YYMVKKILEENSSGDLNINCVDVLGRNAVTITIENENLDILQLLLDYGCQKLMERIQNPE
YSTTMDVAPVILAAHRNNYEILTMLLKQDVSLPKPHAVGCECTLCSAKNKKDSLRHSRFR
LDIYRCLASPALIMLTEEDPILRAFELSADLKELSLVEVEFRNDYEELARQCKMFAKDLL
AQARNSRELEVILNHTSSDEPLDKRGLLEERMNLSRLKLAIKYNQKEFVSQSNCQQFLNT
VWFGQMSGYRRKPTCKKIMTVLTVGMFWPVLSLCYLIAPKSQFGRIIHTPFMKFIIHGAS
YFTFLLLLNLYSLVYNEDKKNTMGPALERIDYLLILWIIGMIWSDIKRLWYEGLEDFLEE
SRNQLSFVMNSLYLATFALKVVAHNKFHDFADRKDWDAFHPTLVAEGLFAFANVLSYLRL
FFMYTTSSILGPLQISMGQMLQDFGKFLGMFLLVLFSFTIGLTQLYDKDYTPKEQKDCVG
IFCEQQSNDTFHSFIGTCFALFWYIFSLAHVAIFVTRFSYGEELQSFIGAVIVGTYNVVV
VIVLTKLLVAMLHKSFQLIANHEDKEWKFARAKLWLSYFDDKCTLPPPFNIIPSPKTICY
MISSLSKWICSHTSKGKVKRQNSLKEWRNLKQKRDENYQKVMCCLVHRYLTSMRQKMQST
DQATVENLNELRQDLSKFRNEIRDLLGFRTSKYAMFYPRN
NT seq
2283 nt
NT seq
+upstream
nt +downstream
nt
atgatggcggccctgtacccgagcacggacctttcgggcgcctcctcctcctccctgcct
tcctccccatcctcctcttcgtcgccgaacgaggtgatggcgctgaaggatgtgcgggag
gtgaaggaggagaacaccctgaatgagaagcttttcttgctggcgtgcgacaagggtgac
tattatatggttaaaaagattttggaggaaaacagttcaggtgacttgaacataaattgc
gtagatgtgcttgggagaaatgctgttaccataactattgaaaacgaaaacttggatata
ctgcagcttcttttggactacggttgtcagaaactaatggagcgaattcagaatcctgag
tattcaacaactatggatgttgcacctgtcattttagctgctcatcgtaacaactatgaa
attcttacaatgctgttaaaacaggatgtatctctacctaagccccatgcagttggctgt
gaatgtacattgtgttctgcaaaaaacaaaaaggacagcctccgacattccaggtttcgt
cttgatatatatcgctgcttggccagtccagctttaataatgttaacagaggaggatcca
attctgcgagcatttgaacttagtgctgatttaaaagaactaagccttgtggaggtggaa
ttcaggaatgattatgaggagctagcccggcaatgtaaaatgtttgctaaagatttactt
gcacaagcccggaattctcgcgaattagaagtcatcctaaaccatacatctagtgatgag
cctcttgacaaacggggactactagaagaaagaatgaatttaagtcgtctaaaacttgct
atcaaatataaccaaaaggagtttgtctcccagtccaactgtcagcagttcctgaacact
gtttggtttggacagatgtcaggttaccgacgtaagcctacctgtaagaagataatgact
gtgttgacagttggcatgttttggccagttttgtcactttgttatttgatagctcccaaa
tctcagtttggcagaattattcacacaccttttatgaaatttattattcatggagcatca
tattttacatttctgctattattaaacctatactctcttgtctacaatgaagataagaaa
aacacaatggggccagcccttgaaagaatagactatcttcttatactgtggattattggg
atgatttggtcagacattaaaagactgtggtatgaagggttggaagactttttagaagaa
tcacgtaatcaactcagttttgtcatgaattcactttatttggcaacctttgccctcaaa
gtggttgctcacaacaagtttcatgattttgctgatcggaaggactgggatgcattccat
cctacactggtggcagaagggctttttgcatttgccaacgttctgagttatcttcgtctc
ttttttatgtatacaacaagctctatcttgggtccattacagatttcaatgggacagatg
ttacaagattttggaaaatttcttggaatgtttcttcttgttttgttttctttcacaatt
ggactgacacaactgtatgataaagactatactccaaaagaacagaaggactgtgtaggc
atcttctgtgaacagcaaagcaatgataccttccattcgttcatcggcacttgctttgct
ttgttctggtatattttctccttagcacatgtggcaatatttgtcacaagatttagctac
ggagaagaattacagtccttcatcggagctgttattgttgggacatacaatgttgtggtt
gtgattgtgcttactaagctactggtggcaatgcttcataaaagttttcagttgatagca
aatcatgaagacaaagaatggaagtttgctcgagcaaagttgtggcttagctactttgat
gacaaatgtacattacccccacctttcaacatcattccttcgccaaagactatctgctat
atgattagtagcctcagtaaatggatttgctctcatacatcgaaaggcaaggttaaacgg
cagaacagcttaaaggaatggagaaatttgaagcaaaagagagatgaaaactaccaaaaa
gtgatgtgctgtttagtgcatcgttacttgacttccatgagacaaaagatgcaaagtaca
gatcaggcaactgtggaaaatctaaatgaactgcgccaagatctgtcaaaattccgaaat
gaaataagggatttacttggctttcggacttctaaatatgctatgttttatccaagaaat
tag
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