KEGG   Phocoena phocoena (harbor porpoise): 136122845
Entry
136122845         CDS       T11058                                 
Symbol
RFC4
Name
(RefSeq) replication factor C subunit 4
  KO
K10755  replication factor C subunit 2/4
Organism
pphc  Phocoena phocoena (harbor porpoise)
Pathway
pphc03030  DNA replication
pphc03410  Base excision repair
pphc03420  Nucleotide excision repair
pphc03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:pphc00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    136122845 (RFC4)
   03410 Base excision repair
    136122845 (RFC4)
   03420 Nucleotide excision repair
    136122845 (RFC4)
   03430 Mismatch repair
    136122845 (RFC4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pphc03032]
    136122845 (RFC4)
   03036 Chromosome and associated proteins [BR:pphc03036]
    136122845 (RFC4)
   03400 DNA repair and recombination proteins [BR:pphc03400]
    136122845 (RFC4)
DNA replication proteins [BR:pphc03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    136122845 (RFC4)
  DNA Replication Termination Factors
   ELG1-RFC complex
    136122845 (RFC4)
Chromosome and associated proteins [BR:pphc03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    136122845 (RFC4)
DNA repair and recombination proteins [BR:pphc03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     136122845 (RFC4)
  Check point factors
   HRAD17(Rad24)-RFC complex
    136122845 (RFC4)
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 RCF1-5-like_lid AAA_lid_RFC1 AAA_assoc_2 Rad17 AAA_16 DUF815 AAA_22 AAA_11 AAA_30 Mg_chelatase AAA_24 SLFN-g3_helicase AAA_28 RuvB_N AAA_19 AAA_5 ResIII DNAX_ATPase_lid AAA_7
Other DBs
NCBI-GeneID: 136122845
NCBI-ProteinID: XP_065733026
LinkDB
Position
4:complement(65349536..65362904)
AA seq 364 aa
MQAFLKGTSISSKPPLTKDRGVAATARSSGENKKAKPVPWVEKYRPKYVDEVAFQEEVVA
VLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVR
EKVKNFAQLTVTGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLIC
NYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIADKEHIKISNEGLAHLVKVSEGDLRK
AITFLQSATRLTGGKEVTEKVITDIAGVIPAETIDGVFAACQSGSFDKLEAVVKDLIDEG
HAATQLVNQLHDGVVENDNLSDKQKSVITEKLAEVDKCLADGADEHLQLIGLCATVMQQL
TQNC
NT seq 1095 nt   +upstreamnt  +downstreamnt
atgcaggcatttctaaaaggcacatctatcagcagtaaaccaccattgactaaggatcga
ggagtagctgccactgccagaagtagtggagagaacaagaaagctaaacctgttccgtgg
gtggaaaaatatcgcccaaaatatgtggatgaagttgctttccaggaagaagtggttgca
gtgctaaaaaagtctttagaaggagctgatctccctaatctcttgttttatggcccacct
ggaactggaaaaacatccactattttggcagcagctagggaactctttgggcctgaactt
tttcgattaagagttcttgagttaaatgcatctgatgaacgtggaatacaagtagttaga
gagaaagtgaagaattttgcccaattaactgtgacaggaagccgttcagatgggaagcca
tgtcctccttttaaaattgtgatcctggatgaagcagattctatgacctcagctgctcag
gcagctttaagacgtaccatggagaaagagtctaaaaccacccgattctgtctcatctgt
aactatgtcagtcgaataattgaacctctgacctctagatgttctaagttccgcttcaaa
cctctgtcagataaaattcaacagcagcgattactagacatcgctgataaagaacatatc
aaaattagcaatgagggactagctcatcttgttaaagtgtcagaaggagacttaaggaaa
gccattacatttcttcaaagtgctactcgattaacaggtggaaaggaggtcacagaaaag
gtgatcacagacattgctggggtaataccagctgaaacaattgatggagtatttgctgca
tgtcagagtggctcttttgacaaactagaagctgtggtaaaggacttaatagatgagggt
catgcagcaactcagcttgtaaatcaacttcatgatggggttgtagaaaatgataacctt
tctgataaacagaaatctgtcattacagaaaaactcgctgaagttgataaatgtttagca
gatggtgctgatgaacatctacagctgatcggcctctgcgcaactgtcatgcagcagtta
actcagaattgttaa

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