Phocoena phocoena (harbor porpoise): 136122941
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Entry
136122941 CDS
T11058
Symbol
RARB
Name
(RefSeq) retinoic acid receptor beta isoform X1
KO
K08528
retinoic acid receptor beta
Organism
pphc Phocoena phocoena (harbor porpoise)
Pathway
pphc05200
Pathways in cancer
pphc05222
Small cell lung cancer
pphc05223
Non-small cell lung cancer
pphc05226
Gastric cancer
Brite
KEGG Orthology (KO) [BR:
pphc00001
]
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
136122941 (RARB)
09162 Cancer: specific types
05226 Gastric cancer
136122941 (RARB)
05222 Small cell lung cancer
136122941 (RARB)
05223 Non-small cell lung cancer
136122941 (RARB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pphc03000
]
136122941 (RARB)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
pphc03310
]
136122941 (RARB)
Transcription factors [BR:
pphc03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
136122941 (RARB)
Nuclear receptors [BR:
pphc03310
]
1. Thyroid hormone like
1B. Retinoic acid receptor (RAR)
136122941 (RARB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
Motif
Other DBs
NCBI-GeneID:
136122941
NCBI-ProteinID:
XP_065733134
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Position
4:complement(2964567..3411106)
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AA seq
455 aa
AA seq
DB search
MTTSSHACHVPAVNGHMTHYPAAPYPLLFPPVIGGLSLPPPHGLHSHPPPSGCSTPSPAT
IETQSTSSEELVPSPPSPLPPPRVYKPCFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNM
IYTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKKKEPSKQECTESYEM
TAELDDLTEKIRKAHQETFPSLCQLGKYTTNSSADHRVRLDLGLWDKFSELATKCIIKIV
EFAKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNA
GFGPLTDLVFTFAGQLLPLEMDDTETGLLSAICLICGDRQDLEEPTKVDKLQEPLLEALK
IYIRKRRPSKPHMFPKILMKITDLRSISAKGAERVITLKMEIPGSMPPLIQEMLENSEGH
EPLTPSSSGNTAEHSPSTSPSSVENSGVGQSPLLQ
NT seq
1368 nt
NT seq
+upstream
nt +downstream
nt
atgaccaccagtagccacgcatgtcacgtcccagcagtgaacgggcacatgactcactat
cccgccgcaccctacccactactcttcccaccggtcattggcggactctccctgcctccc
ccgcatggcctccacagccatcctccgccgagtggatgtagcaccccatcacctgcaacg
attgaaacacagagcaccagctccgaggaactggtcccgagccctccgtctccacttcct
ccccctcgggtgtacaagccttgcttcgtctgccaggacaagtcatcggggtaccactac
ggggtcagcgcctgcgaggggtgtaaggggtttttccgcagaagtattcagaagaacatg
atttacacttgtcaccgagataagaactgtgttattaataaagtcaccaggaatcgatgc
cagtactgtcgactccagaagtgctttgaagtgggaatgtccaaagaatcggtcaggaat
gacagaaacaagaaaaagaaggagccttcgaagcaggaatgcacggagagctacgaaatg
acggccgagctggacgatctcacggagaagatccggaaagcccaccaggaaaccttcccc
tcgctctgccagctgggcaagtacaccacgaattccagtgccgaccatcgagttcgactg
gatctgggcctctgggacaaattcagtgaactggctaccaagtgcattattaagatcgtg
gagtttgctaaacgtctgccaggcttcactggcttgaccatcgcagaccaaatcacgctg
ttgaaggcggcctgtttggacatcctgattctgagaatctgcaccaggtataccccagag
caagacaccatgacgttttcggacggcctgaccctgaatcgaacccagatgcacaacgcc
gggttcggccccctgaccgacctcgtgttcaccttcgccggccagcttctgcctctggag
atggacgacacggagacaggccttctcagcgccatctgcttgatctgtggagaccgtcag
gaccttgaggaaccaacaaaagtagataagctacaagaaccactgctggaagcactaaaa
atttatatcagaaagagacgacccagcaagcctcacatgtttccaaagatcctcatgaaa
atcacagatctccgcagcatcagtgctaaaggtgcagaacgtgtaattaccttgaaaatg
gaaattcctggctccatgccccctctcattcaggaaatgctggagaattctgaaggacat
gaacccttgaccccaagctcgagtgggaacacagcagagcacagtcccagcacctcgccc
agttccgtggagaacagcggtgtcggtcagtcaccactgctgcaataa
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