Phocoena phocoena (harbor porpoise): 136123183
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Entry
136123183 CDS
T11058
Name
(RefSeq) LOW QUALITY PROTEIN: polyadenylate-binding protein 4-like
KO
K13126
polyadenylate-binding protein
Organism
pphc Phocoena phocoena (harbor porpoise)
Pathway
pphc03015
mRNA surveillance pathway
pphc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pphc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
136123183
09123 Folding, sorting and degradation
03018 RNA degradation
136123183
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pphc03019
]
136123183
03041 Spliceosome [BR:
pphc03041
]
136123183
Messenger RNA biogenesis [BR:
pphc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
136123183
mRNA cycle factors
Stress granule specific factors
136123183
Spliceosome [BR:
pphc03041
]
Complex C
Other components
Complex C specific factors
136123183
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_5
RBD_DEAH11
RRM_occluded
RRM_10
RRM_3
RRM_MARF1
Motif
Other DBs
NCBI-GeneID:
136123183
NCBI-ProteinID:
XP_065733311
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All DBs
Position
5:62870739..62871853
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AA seq
341 aa
AA seq
DB search
MHVAAKYRQASLYVGDLHADVTEDLLFKKFSAVRPVLSICICRDLVTCRSLGYAYVNFLQ
LADAQKALDTTNFDPIKGKSIRLMWSQRDAYLRKSGIGNMMSDDHGSRCYAFVHFQNQIA
TDRAIQEMNGALLKDCRLFVGKFKSRKDREAELQNKASEFTNVYIKNFGDDMDDERLREV
FSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAAEEMNGKDINGQLLFVGRAQKKA
EXQAELKQMSEQLKQERFWQCRGAKLYIKNLDETTDDEKLRREFSSFGSISRVKVMQEEG
XSKGFGLICFSSPEEATKAMTEMNGRILASKPLNIALAQRL
NT seq
1026 nt
NT seq
+upstream
nt +downstream
nt
atgcatgtagctgccaagtaccgccaggcctccctgtacgtgggtgacctccacgcggat
gtcaccgaggacctgctgtttaagaagttcagcgctgtgaggcccgtgctgtctatctgc
atctgcagggacctggtcacctgccgctctctgggctatgcctatgtgaactttctgcag
ctggcagatgcccagaaggccctggacaccacgaactttgaccctataaagggcaaatcc
atccgtctcatgtggtctcagcgtgacgcctacttgaggaaatctggaattgggaacatg
atgagtgatgatcacggctccaggtgctatgcgttcgtgcactttcagaaccagattgcc
accgatagggccatccaggagatgaatggtgcactgcttaaggactgcaggctgtttgtt
ggcaaattcaaaagccgcaaagatcgggaagccgagctccaaaacaaagccagtgagttc
accaatgtttacatcaaaaacttcggagatgacatggatgatgagagactgagggaagtt
ttcagcaaatatgggaaaaccctgagtgttaaggtgatgacagattccagtgggaaatcc
aaaggctttggctttgtgagttttgatagccatgaggctgccaaaaaggctgctgaagaa
atgaatggaaaggacataaatggacaactgctttttgtaggccgggcacaaaagaaagca
gagtgacaggctgagttaaagcaaatgtctgagcagctgaaacaggaaagattttggcag
tgccggggggcaaaactctatattaagaacctggatgagaccactgatgatgaaaagcta
cggagggagttttcttcatttggatcaattagcagagttaaggtaatgcaggaagaaggg
tgaagcaaagggtttggcttgatctgcttctcctctcctgaggaggccactaaagcaatg
actgagatgaatggccgcatcttggcctccaagccgctcaacatcgccctggcccagagg
ctgtag
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