Phocoena phocoena (harbor porpoise): 136123198
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Entry
136123198 CDS
T11058
Symbol
RFC1
Name
(RefSeq) replication factor C subunit 1
KO
K10754
replication factor C subunit 1
Organism
pphc Phocoena phocoena (harbor porpoise)
Pathway
pphc03030
DNA replication
pphc03410
Base excision repair
pphc03420
Nucleotide excision repair
pphc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pphc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
136123198 (RFC1)
03410 Base excision repair
136123198 (RFC1)
03420 Nucleotide excision repair
136123198 (RFC1)
03430 Mismatch repair
136123198 (RFC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pphc03032
]
136123198 (RFC1)
03400 DNA repair and recombination proteins [BR:
pphc03400
]
136123198 (RFC1)
DNA replication proteins [BR:
pphc03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
136123198 (RFC1)
DNA repair and recombination proteins [BR:
pphc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
136123198 (RFC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
PTCB-BRCT
AAA_22
Rad17
BRCT_2
AAA_14
RuvB_N
AAA_5
AAA_30
AAA_33
AAA_17
AAA_7
AAA_16
AAA_18
nSTAND3
Zeta_toxin
RNA_helicase
NPHP3_N
NTPase_1
AAA_19
AAA_28
Motif
Other DBs
NCBI-GeneID:
136123198
NCBI-ProteinID:
XP_065733320
LinkDB
All DBs
Position
5:75259435..75337392
Genome browser
AA seq
1176 aa
AA seq
DB search
MDMELRGLESRQDLAGSSVFLSGTDIEMDDIRKFFGVIPSGKKVVSETAKKNEKTKSAEE
TRKAKKGIKEIKVNRSCKEDDFKQKQPNKKKRIIYDSDSESEETVQVKNSKKRPEKLPLS
SKPAKIRHQDPVTYISETDEEDDFVCKKAASKSKENGGSPNSYLGASNMKKNEENTKTLN
TKNKPLSPMKLTPTSVLDYFGTASVQRSAKKMVASKRKEPSQNADDSRLNDEAIAKQLQL
DEDAELERQLHEDEEFARTLAMLDEEPKTKKAQKDPGERETFSSVQASLCKAEKPKYPHK
GKTKQFSDDRKNCSPKKQTKCGSSKESQQHSRSSTHKIGETSSPKTSSKLAPLKKKEESS
NKETEPMASKRKENAIELKETRTPKKIKSSPAKKESVSPEDSEKRRTNYQAYRSYLNREG
PKALGSKEIPKGAENCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVM
GRDSGQSKSDKAAALGTKIIDEDGLLNLIRTMPGKKSKYEIAAEAEMKKEKSKLERTPQK
NDQGKRKISPTKKESESKKCRLTPKKQSSIKSIKKETSMFQRGLDFTEQVAEETNGDSWS
RNLADDSSENKVENLLWVDKYKPSSLKTIIGQQGDQSCANKLLRWLQNWHKSPSEDKKHA
KFGKFAGKDDGSSFKAALLSGPPGVGKTTTASLVCQELGYSYVELNASDTRSKNSLKEIV
AESLNNTSIKGFYSSGAAHSVGTKHALIMDEVDGMAGNEDRGGIQELIGLIKHTKIPIIC
MCNDRNHPKIRSLVHYCFDLRFQRPRVEQIKGAMMSIAFKEGLKIPPPAMNEIILGANQD
IRQVLHNLSMWCARSKALTYDQAKADSLRAKKDIKLGPFDVARKVFVTGEETAHMSLVDK
LDLFFHDYSIAPLFVQENYIHVKPVAAGGDMKKHLTLLSRAADSISDGDLVDRQIRNKQN
WSLLPTQAIYASVLPGELMRGYMTQFPTFPSWLGKHSSMGKHDRIVQDLALHMSLRTYSS
KRTVNVDYLSHIRDALVQPLTSQGIEGVQDVVALMDAYYLMKEDFENIMEISSWGDRPSP
FSKLDPKVKAAFTRAYNKEVHLIPYSLQAVKTHRHSTGPALDAEYNEELNEDDSQSDEKD
QDTLETDAMIKKKTKSSKTSKSEKESRKGKGKSSKK
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atggatatggagctcagaggtcttgagtcgagacaagatttagcaggtagcagtgtgttt
ttaagtggtactgacattgagatggatgatattcgaaaattctttggggttataccaagt
ggaaagaaagttgtaagtgaaacagcaaagaagaatgagaaaacgaagtctgctgaagaa
accagaaaagcgaagaaaggaataaaggaaatcaaggtaaatcgttcttgtaaagaagat
gacttcaaacagaagcaaccaaacaagaaaaagaggatcatctatgattcagattcagaa
tcagaggagacagtgcaggtaaaaaactccaaaaagcgaccagaaaaattgccactgtct
tctaaacctgctaaaattcgacaccaggatcctgttacatacatttcagaaacagatgaa
gaagacgactttgtgtgtaagaaggcagcctctaaatcaaaagagaatggaggatctcca
aatagttatcttggagcatcaaacatgaagaagaatgaagaaaatactaagacactaaac
actaagaataagcctttgtcaccaatgaagcttacccccacatcagtgcttgattatttt
ggaactgcaagtgtccaaagatcggctaagaagatggtggcaagcaaaagaaaagagcct
tcacagaatgcagatgattccagattaaatgatgaagccatcgccaagcaattgcaactt
gatgaagatgcagagctagagagacaactgcatgaagatgaagagtttgccagaacatta
gccatgttggatgaagaacccaagaccaaaaaggctcagaaggacccaggagagagagag
acgttttcatctgtgcaagccagtttatgtaaagcagaaaaacctaaatatcctcataaa
ggtaaaactaaacaattttcagatgacaggaagaactgcagtcctaagaagcaaactaaa
tgtggaagttcaaaagaatctcagcaacattccaggtcatccactcataaaataggagaa
acttcttctccaaaaaccagttccaagctggcaccactgaaaaaaaaagaagaaagttct
aataaagaaacagagcctatggcctcaaaaagaaaagaaaatgccattgagttgaaagag
acaagaactcctaagaaaatcaaaagttctccagctaaaaaagagtctgtaagtcctgaa
gattctgaaaagagacgaactaattatcaagcttatcgaagctacttaaatcgagaaggt
cccaaagctctgggctccaaagagataccaaagggagctgaaaattgcttggaaggcctt
acatttgtaatcacaggagtgctggagtccattgaacgagatgaggccaagtctctaatt
gagcgttatgggggaaaagtaacaggaaatgtcagcaagaaaacaaactaccttgtcatg
ggtcgtgatagtggtcagtccaagagtgataaggcagcagccttgggaacaaaaattatt
gatgaagatggcctattgaatctgattcgaactatgccaggcaagaagtccaagtatgaa
atagcagctgaagctgagatgaagaaagaaaaatccaaattggaaagaacaccccaaaaa
aatgaccaaggaaaaagaaaaattagtccaactaagaaggaatcagaatctaaaaagtgc
agactgactcccaaaaagcaaagctctataaagtcaataaaaaaggaaacaagtatgttt
cagagaggcctggacttcacggagcaggtggctgaggaaacaaatggtgacagctggtct
aggaatttggctgatgacagcagtgaaaacaaagtggagaatttgctctgggtggataaa
tataagccatcctcgctcaagaccataattggacagcaaggtgaccagagctgtgccaac
aaactcctacgctggctccaaaactggcacaagagtccatccgaagataagaaacacgca
aagtttggtaaatttgctggcaaagatgatggctccagttttaaagctgcattgctctca
ggccctcccggtgttggcaaaacaaccacagcttctctggtttgtcaggaattgggatat
agctacgtggaactgaatgcaagtgacactcggagtaagaacagtttgaaggagattgtt
gctgaatcgctgaataataccagcatcaaaggcttttattcaagtggagcagcccattca
gtaggcacgaaacatgctctcatcatggatgaagtagatggcatggccggcaatgaggac
aggggaggaattcaggaattaattggcctgataaaacatacaaaaattcccattatttgt
atgtgcaatgatagaaatcatcccaagattcgatctttggttcattattgttttgatctt
cgttttcaaagacctcgggttgaacaaattaagggtgctatgatgtctattgcatttaaa
gagggtttaaagattccccctccagctatgaatgaaataattttgggagccaatcaagat
atcagacaggttttacacaatctgagtatgtggtgtgcacgaagtaaagcactaacctat
gaccaggctaaggctgattctcttagagccaaaaaggatatcaaattgggcccatttgat
gttgcccggaaagtgtttgtaactggagaggagactgctcatatgtcacttgtggacaaa
ttagatctcttttttcatgattattcaatagcacccctctttgtccaggagaactacata
catgtgaagcctgtagccgcagggggtgacatgaaaaagcacttgacgcttttaagcaga
gcagcagacagcatatctgatggtgacctagtggaccgtcagatccggaataagcaaaac
tggagtcttctgcccacacaggccatttatgccagtgttcttcctggagagttaatgagg
ggatacatgacccagtttcctaccttcccaagttggttggggaagcactcatctatgggc
aaacatgatcgtattgttcaggacctagctttgcatatgagtctcagaacttactccagc
aaaaggactgtaaacgtggattatctgtcacatataagggatgcacttgtacagcccttg
acctcacaagggatagaaggagtacaggatgttgttgctcttatggacgcgtattatttg
atgaaagaagactttgagaatatcatggaaattagcagctggggagacagacctagtccc
ttctccaagctggatcccaaggtgaaagcagccttcacaagagcttacaataaggaagtc
caccttattccgtattcactccaggcagtaaagacacacagacacagcacaggcccagcg
ctggatgctgagtacaatgaagaattaaatgaagatgactctcaatctgatgagaaggac
caggacactttggaaactgatgctatgatcaagaaaaagacaaaatcttcaaagacttca
aaatcagaaaaagagtccagaaaaggaaaaggaaaaagttcaaagaaataa
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integrated database retrieval system
