Phocoena phocoena (harbor porpoise): 136123327
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Entry
136123327 CDS
T11058
Symbol
SMARCAD1
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 isoform X1
KO
K14439
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 [EC:5.6.2.-]
Organism
pphc Phocoena phocoena (harbor porpoise)
Pathway
pphc04550
Signaling pathways regulating pluripotency of stem cells
Brite
KEGG Orthology (KO) [BR:
pphc00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04550 Signaling pathways regulating pluripotency of stem cells
136123327 (SMARCAD1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pphc03036
]
136123327 (SMARCAD1)
Chromosome and associated proteins [BR:
pphc03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
136123327 (SMARCAD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
DEAD
HDA2-3
CUE
ERCC3_RAD25_C
TTC3_9th
Motif
Other DBs
NCBI-GeneID:
136123327
NCBI-ProteinID:
XP_065733478
LinkDB
All DBs
Position
5:12925206..12993017
Genome browser
AA seq
1028 aa
AA seq
DB search
MNLFNLDRFRFEKRNKIEEAPEATPQPSLPGPSSPISLSAEEENAEGEVSRAGTPDSDIT
EKTEDSSVPETPENERKASISYFKNQRGIQYIDLSSDSEDVISPDCSRTVQEKKFSKDTV
IIVSEPSEDEESQGLPTMAGRNNNDISELEDLSELEDLKDAKLQTLKELFPQRSDSDLLK
LIESTSTMDGAIAAALLMFGDAEGGGPRKRKLSSSSEPFEEDEFNDDQSMKKKRLDQGEE
SNESAESSSNWEKQESIVLKLQKEFPNFDKEELREVLKEHEWMYTEALESLKVFAEDQDM
QYASPSEFPNGKEVSSRSQNYPKNAAKTKLKQKCSMKPQNGFNKKRKKTVFNPKRVIEDS
EYDSGSDVGSSLDEDYSSGEEVMEDGYKGKILHFLQDASIGELTLIPQCSQKKAQKITEL
RPFNSWEALFTKMSKTNGLSEDLIWHCKTLIQERDVVIRLMNKCEDISNKLTKQVTMLTG
NGGGWNIEQPSILNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAY
LYQEGNKGPHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIRYNIHSKYEEYN
VIVTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGT
PVQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQTVYEKERIAHAKQIIKPF
ILRRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNLEKNTEMCNVMMQL
RKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYR
HINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYL
RLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQ
AEDRCHRVGQTKEVLVIKLIGQGTIEESMLKINQQKLKLEQDMTTVDEGDEGSMPADIAT
LLKTSMGL
NT seq
3087 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttttcaacctggaccgttttcgctttgagaaaaggaataagattgaggaagcg
cccgaagcaacccctcaaccctccctgcctggcccttcttcaccaatttctcttagtgct
gaagaggagaacgctgaaggggaagttagcagggcaggcacccctgattcagatataact
gaaaaaacagaagattctagtgttccagaaaccccagaaaatgaaagaaaagcaagtata
tcatatttcaagaatcaaagaggaattcaatatattgatttgtcttcagatagtgaagat
gttatttccccagattgctccaggacagttcaagagaaaaaattcagcaaagacacggtg
attatagtttctgagccatctgaagatgaagagtcccaaggccttcctaccatggcaggt
agaaataataatgatatttcagaattggaagacctttcggaattggaagaccttaaagat
gctaaacttcagaccttgaaggaactttttccacagagaagtgacagtgatttacttaag
ttaattgaatcaaccagcactatggatggagcaattgctgctgccttgctgatgtttggt
gatgcagaaggtggtggacctaggaaaagaaaattatcttcttcttcagagccatttgag
gaagatgaatttaatgatgatcagtctatgaaaaagaagagattggatcaaggagaggag
tcaaatgagtctgcagaatctagcagtaattgggaaaaacaggaaagtattgtgttgaaa
ttgcaaaaggaatttcccaattttgataaagaggaattaagggaagtgctcaaggaacat
gaatggatgtacacagaggctttagaatccttaaaagtgtttgcggaagaccaagatatg
caatatgcttcaccaagtgagtttccaaatggaaaagaagtttcttcaaggagtcaaaat
tatcctaaaaacgcagctaaaacaaaactgaaacagaagtgttccatgaaaccacaaaat
ggttttaacaagaaacgaaaaaaaactgtatttaatcctaaaagagttattgaagactct
gaatatgattcaggttctgatgtcggtagttcattagacgaggactatagtagtggtgaa
gaagtgatggaggatggctataaaggtaaaattcttcacttccttcaagatgcttcaatt
ggtgaacttactttgattcctcagtgttctcagaaaaaggctcagaagataacagaactc
cggccctttaatagttgggaagctctgttcacaaagatgtccaaaacgaatggcttatca
gaagatttgatatggcactgtaaaacactgatccaagaaagggatgtagttataaggctt
atgaacaaatgtgaagacatttcaaataaattgacaaaacaagttaccatgctcactgga
aatggaggtggatggaacatagaacaaccctccattctaaaccaaagtttgtcactcaag
ccctatcagaaggttggtttgaattggctggcattggtacataaacatggacttaatggc
attttggcagatgaaatgggcctgggaaaaactattcaagcgattgcattcctagcgtac
ctctatcaggagggtaataaaggtcctcatttgattgttgttccagcatcaactatagat
aactggctaagggaagttaatttatggtgtcccactttaaaggtgctctgttactatggt
tctcaagaagaacgtaaacagattagatataacattcatagtaaatacgaggaatacaat
gtaatcgtgaccacgtataattgtgcaatcagcagttctgatgatcgtagtctgtttcgt
cggctgaaattgaattacgcaatttttgatgagggccatatgctaaagaatatgggctcc
atccgctaccagcaccttatgacaattaatgcaaataaccgtttgctgctcacaggcaca
cctgtgcagaataacctgttagaactcatgtcgctgttgaattttgttatgccgcacatg
ttcagtagtagcaccagtgaaatacgaagaatgttttcttctaagacaaaatcagcagat
gagcaaactgtatatgaaaaggagagaatagcacatgcaaaacaaattataaaaccattt
attctcagaagagtaaaagaagaggttctcaagcagctaccccccaagaaagatcgaatt
gagttgtgtgcaatgtcagagaagcaggagcaactctatttgggtcttttcaacagattg
aaaaaatctatcaataacttggaaaaaaacacagaaatgtgcaatgtcatgatgcaattg
agaaaaatggccaatcatcctttattacatcgccaatattacacagctgaaaaactcaag
gaaatgtctcagcttatgctaaaggaacctacacattgtgaggctaaccctgacctgatc
tttgaagatatggaagttatgacagactttgaattacatgtactttgtaaacagtatcga
cacattaataacttccagttagacatggacttgattttagattctggaaaatttcgagtt
ttaggctgcatcttgtctgaattgaaacagaagggtgatagagttgtattatttagccaa
tttaccatgatgctggatattttagaggttctcttaaaacatcatcagcataggtacctc
agattagatggaaagactcagatttctgaaaggattcatctaattgacgagtttaatacc
gatatggatatctttgtgtttctgctgtcaacaaaagctggtggcctaggaataaacctg
acttcagcaaatgttgttatacttcacgatattgactgtaatccttacaatgacaaacaa
gcagaagatagatgccatagagtaggccagactaaagaagtactagttataaaattaata
ggccaagggacaatcgaagaatccatgctaaaaattaatcaacagaaattgaaactagaa
caagatatgaccacagtagatgaaggtgacgaagggagtatgccagcagatatagccaca
ttactaaaaacatcaatgggcctgtga
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