Phocoena phocoena (harbor porpoise): 136123360
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Entry
136123360 CDS
T11058
Symbol
FIP1L1
Name
(RefSeq) pre-mRNA 3'-end-processing factor FIP1 isoform X1
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
pphc Phocoena phocoena (harbor porpoise)
Pathway
pphc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pphc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
136123360 (FIP1L1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pphc03019
]
136123360 (FIP1L1)
Messenger RNA biogenesis [BR:
pphc03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
136123360 (FIP1L1)
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Gene cluster
GFIT
Motif
Pfam:
Fip1
Motif
Other DBs
NCBI-GeneID:
136123360
NCBI-ProteinID:
XP_065733541
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Position
5:complement(65998003..66063156)
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AA seq
606 aa
AA seq
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MSAGEVERLVSELSGGTGGDEEEEWLYGGPWDVHVHSDLAKDLDENEVERPEEENASANP
PSGIEDETPENGVPKPKVTETEDDSDSDSDDDEDDVHVTIGDIKTGAPQYGSYGTAPVNL
NIKTGGRVYGTTGTKVKGVDLDAPGSINGVPLLEVDLDSFEDKPWRKPGADLSDYFNYGF
NEDTWKAYCEKQKRIRMGLEVIPVTSTTNKITAEDCTMEVTPGAEIQDGRFNLFKVQQGR
TGNSEKETALPSTKAEFTSPPSLFKTGLPPSRNSTSSQSQTSTASKKANSSVGKWQDQYG
RAESPDLRRLPGAIDVIGQTITISRVEGRRRANENSNIQVLSERSATEVDNNFSKPPPFF
PPGAPPTHLPPPPFLPPPPTVSTAPPLIPPPGIPITVPPPGFPPPPGAPPPSLIPTIESG
HSSGYDSRSARAFPYGNVAFPHLPGSAPSWPSLVDTSKQWDYYSRREKDRDRDRDRDRER
DRDRDRERERTRERERERDHSPTPSVFNRYVHDEERYRYREYAERGYERHRASREKEERH
RERRHREKEETRHKSSRSNSRRRHESEEGDSHRRHKHKKSKRSKEGKEAGSEPAPEQEST
EAPPAE
NT seq
1821 nt
NT seq
+upstream
nt +downstream
nt
atgtcggccggcgaggtcgagcgcctagtgtcggagctgagcggcgggaccggaggggat
gaggaggaagagtggctctatggcggcccatgggacgtgcatgtgcacagtgatttggca
aaggacctagatgaaaatgaagttgaaaggccagaagaagaaaatgccagtgctaaccct
ccatcgggaattgaagatgaaactcctgaaaatggcgtacctaaaccgaaagtgacagag
actgaagacgatagtgatagcgacagtgatgatgatgaggatgatgttcatgtcactata
ggagacattaaaacgggagcaccacagtatgggagttacggtacagcacctgtaaatctt
aacatcaagacaggaggaagagtttatggaactacaggaacgaaagtcaaaggagtagat
cttgatgcacctggaagcattaatggggtgccccttttggaggtagatttggattctttt
gaagataaaccatggcgtaaacctggtgctgatctttctgattattttaattatgggttt
aatgaagatacctggaaagcttactgtgaaaaacaaaagaggatacgaatgggactggaa
gttataccagttacctctactacaaataaaattacggccgaagactgtactatggaagtt
acaccaggtgcagagatccaagatggcagattcaatctttttaaggtacagcagggaaga
actggaaattcagagaaggaaacagcgcttccatctacaaaagctgagtttacttctcct
ccttctttgttcaagactggactcccaccaagcagaaacagcacctcttctcagtctcag
acaagtactgcctccaaaaaagccaattcaagcgttgggaagtggcaggatcaatatggg
agggccgaatcacctgatctaaggagattacctggggcaattgatgttattggtcagact
ataactatcagccgagtagaaggaaggcgacgggcaaatgaaaacagcaacatacaggtc
ctttctgaaagatctgctactgaagtagacaacaattttagcaaaccaccgccatttttc
cctccaggagctcctcccactcaccttccacctcctccatttcttccacctcctcccact
gtcagcactgctccacctctgattccaccaccaggtattccaataactgtaccacctcca
ggttttcctcctccaccaggcgctccacctccgtctcttataccaacaatagaaagtgga
cattcctctggttatgatagtcgttctgcacgtgcttttccatatggcaatgttgccttt
ccccaccttcctggttctgctccttcatggcctagtcttgtggacaccagcaagcaatgg
gactattactcaagaagagagaaagaccgagacagagacagagacagagaccgagaacga
gatcgtgatcgagacagagaaagagaacgcaccagagagagagagagggagcgtgatcat
agtcccacgccgagtgttttcaacaggtatgttcatgatgaagaacgatacagatacagg
gagtatgcagaaagaggctatgagcgccacagagcaagtcgggagaaagaagaacgacac
agagaaagacgacacagagagaaagaagaaaccagacacaagtcctctcgaagtaatagt
agacgtcgccatgaaagtgaagaaggagacagtcataggagacacaagcacaaaaaatcc
aaaagaagcaaagaaggaaaagaagctggcagcgagcctgcccctgaacaggagagcacc
gaagctccacctgcagaatag
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