Phocoena phocoena (harbor porpoise): 136123400
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Entry
136123400 CDS
T11058
Symbol
CNOT6L
Name
(RefSeq) CCR4-NOT transcription complex subunit 6-like isoform X1
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
pphc Phocoena phocoena (harbor porpoise)
Pathway
pphc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pphc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
136123400 (CNOT6L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pphc03019
]
136123400 (CNOT6L)
Enzymes [BR:
pphc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
136123400 (CNOT6L)
Messenger RNA biogenesis [BR:
pphc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
136123400 (CNOT6L)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
136123400 (CNOT6L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
LRR_8
LRR_4
LRR_14
LRR_1
LRR_LRWD1
LRR_R13L1-DRL21
Motif
Other DBs
NCBI-GeneID:
136123400
NCBI-ProteinID:
XP_065733662
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All DBs
Position
5:45010880..45122602
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AA seq
558 aa
AA seq
DB search
MPKEKYDPPDPRRIYTIMSAEEVANGKKSHWAELEISGRVRSLSTSLWSLTHLTALHLND
NYLSRIPPDIAKLHNLVYLDLSSNKLRSLPAELGNMVSLRELLLNNNLLRVLPYELGRLF
QLQTLGLKGNPLSQDILNLYQDPDGTRKLLNFMLDNLAVHPEQLPPRPWITLKERDQILP
SASFTVMCYNVLCDKYATRQLYGYCPSWALNWEYRKKGIMEEIVNCDADIISLQVTLYLS
SQEVETEQYFTLFLPALKERGYDGFFSPKSRAKIMSEQERKHVDGCAIFFKTEKFTLVQK
HTVEFNQVAMANSDGSEAMLNRVMTKDNIGVAVVLEVHKELFGAGMKPIHAADKQLLIVA
NAHMHWDPEYSDVKLIQTMMFVSEVKNILEKASSRPGSPTADPNSIPLVLCADLNSLPDS
GVVEYLSNGGVADNHKDFKELRYNECLMNFSCNGKNGSSEGRITHGFQLKSAYENNLMPY
TNYTFDFKGVIDYIFYSKTHMNVLGVLGPLDPQWLVENNITGCPHPHIPSDHFSLLTQLE
LHPPLLPLVNGVHLPNRR
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atgccaaaggaaaaatatgaccctccagatcctcgcagaatttataccatcatgtcagca
gaggaggtagccaatgggaaaaaatctcactgggcagaattagaaatctcgggtagagtg
cggagcttaagtacatcactttggtcattgacacacttgacagcactgcacctaaatgac
aattaccttagtcgcattccacctgatattgccaagcttcataatctggtttacctggat
ctgtcatccaataaactcagaagtttaccagcagaactaggaaacatggtgtctctcagg
gaattgcttttaaataacaatctgttacgggttttgccttatgaacttggtcggctcttc
cagctacaaactctaggtttgaaaggcaatcctttatcacaggatattctcaatttatac
caggacccagatggaacccgaaagctactgaacttcatgcttgacaatcttgcagttcat
ccagagcagcttcctccgaggccatggattacattaaaagaacgagaccaaattctgcca
tcagcatcattcacggttatgtgttataatgtgttatgtgataaatacgccacccggcag
ctatatggctattgcccatcctgggcattaaactgggaatacaggaaaaagggaattatg
gaagaaattgttaactgtgacgcagatatcattagtcttcaggtaacactatatttgtca
tctcaggaagtggaaacagagcaatacttcactctctttctgccagcattgaaggagcgt
ggatatgatggatttttttctccaaagtcacgtgccaaaatcatgtctgagcaggagaga
aagcatgtggatggttgtgcaatattcttcaaaacagaaaaatttacattggtgcagaag
catacagtggaatttaaccaagtggcaatggctaattcagatggatccgaagctatgttg
aacagagtgatgacaaaagataatattggtgtcgctgtggtattagaggtccacaaagaa
ctatttggagcaggtatgaagcctattcatgctgcagacaaacagctgcttatagtggca
aatgcccacatgcattgggacccagagtattctgatgtgaaactcattcagaccatgatg
tttgtctcagaggttaaaaacattctggagaaagcctcaagtaggcctggcagcccaact
gcagatcctaattccatcccgctggtgctatgtgcagatcttaactcattgccagattca
ggtgtcgtggaatatttaagcaatggaggagtagctgacaaccataaagacttcaaggaa
ctaaggtacaatgagtgtcttatgaacttcagctgcaatggaaagaatggaagctcagaa
gggagaatcacacatggcttccaactgaagagcgcctatgaaaataacttgatgccttac
accaattacacctttgatttcaaaggcgtgattgactacattttctattccaagactcat
atgaacgtgcttggtgtcctggggcctttagatcctcaatggctggttgagaacaacatc
actgggtgtccacaccctcacatcccttcagaccacttctcactgttaacacaacttgaa
ctccaccctccactcctgcctcttgtcaatggggttcacttgcctaatcggaggtag
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