Phocoena phocoena (harbor porpoise): 136123405
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Entry
136123405 CDS
T11058
Symbol
COL25A1
Name
(RefSeq) collagen alpha-1(XXV) chain isoform X1
KO
K24356
collagen type XXV alpha
Organism
pphc Phocoena phocoena (harbor porpoise)
Pathway
pphc04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
pphc00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
136123405 (COL25A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pphc00536
]
136123405 (COL25A1)
Glycosaminoglycan binding proteins [BR:
pphc00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
136123405 (COL25A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
136123405
NCBI-ProteinID:
XP_065733672
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Position
5:complement(108558072..109019666)
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AA seq
623 aa
AA seq
DB search
MLVKKQAGKGGGREPGSEDRSPAGQRCARTVSPCAALTALLSVVAVISCLYLGVKTNDLQ
ARIAALESAKGDPSIRLLPDCLDQLKAMVQEKVERLLAQKSYEHMAKIRIAREAPSECNC
PAGPPGKRGKRGRRGESGPPGQPGPEGRPGPKGDKGEQGDQGPRGLPGFSTVAALHSNQI
LTVKGDQGQAGPPGPPGPPGPRGPPGDTGKDGPRGMPGVPGEPGKPGEQGLMGPLGSPGQ
KGSVGAPGIPGMNGQKGEPGLPGAVGQNGIPGPKGQPGERGEKGDAGENGPKGDTGEKGD
PGSSAAGVKGEPGESGRPGQKGEPGLPGLPGLPGIKGEPGFIGPQGEPGLPGLPGTKGDR
GEAGHPGRGDRGEPGAPGPKGDRGDKGDSGALGPRGPPGQKGDQGATEIIDYNGNLHEAL
QGPPGPPGPQGLQGPKGEPGSPGVPGVDGEQGLKGSKGDMGDPGMPGEKGGIGLPGLPGA
NGMKGEKGDSGLPGPQGPSIIGPPGPPGPHGPPGPMGPHGLPGPKGEPGLNGVKGLKGEP
GQKGDRGPLGLPGASGLDGKPGSRGTDGPMGPHGPAGPKGERGEKGAMGEPGPRGPYGLP
GFPGPRGEKGDLGEKGEKVTSPA
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atgctggtgaagaagcaagcagggaaaggaggggggcgggagccgggctccgaggaccgg
agcccagccgggcagcgttgtgcccggaccgtgtccccgtgcgccgccctgaccgccctc
ctgtcagtagtggccgtgatatcttgtctgtacctgggggtgaaaaccaacgacctccag
gcgaggatcgccgccctcgaatccgccaaaggagacccttccatccgtctgctgcctgat
tgtctggatcagctcaaagcaatggtgcaggagaaagtggagcgacttctggctcagaaa
tcctatgaacatatggctaaaataagaatcgcaagagaagcaccttcagagtgcaactgc
ccagcaggccctccggggaaacgaggtaaaaggggccgaagaggagaatctggtcctcct
ggtcagcctggtcctgagggccgtcctggtccaaaaggtgataagggagaacagggcgat
cagggacctcggggtctgcccggcttctccacagttgccgctctgcacagtaatcagatc
ctcaccgtcaagggtgaccaaggacaggctgggcctccaggccctccaggacctccaggc
ccacgagggcctcctggggacacagggaaagatggcccccgcggaatgccaggagtgcct
ggtgaaccagggaaaccgggagaacaaggcttgatgggtcctctggggtctccaggacaa
aagggttctgttggagcacctggaattccagggatgaatgggcaaaagggtgaacccggg
ttgcctggagcagtaggacagaatggaataccagggccaaagggacaacctggagaacga
ggagaaaagggagatgctggagagaatggccccaaaggtgatacaggtgaaaagggtgac
cctggatcgtccgctgcaggagttaagggagagcccggagaatctggtcgtccagggcaa
aagggtgaaccagggcttcctgggcttcctggacttccggggataaagggagaaccaggt
ttcattggtcctcaaggagaaccaggcttaccagggttaccaggaacaaagggcgaccgt
ggggaggcagggcatcctggaagaggggatcgaggggagcctggagcccctggaccaaag
ggtgaccgtggagacaaaggggactctggagccctgggaccaaggggtccacctggtcaa
aagggagatcaaggagccaccgagatcatagactacaacggcaacctccacgaagccttg
cagggtccccctggaccacctggacctcaaggactacaagggccaaagggagagccagga
tctccaggagtcccaggagttgatggagagcagggactcaaaggttcaaagggagacatg
ggggacccaggtatgccaggtgaaaaaggaggaattggacttcctggattaccgggtgcc
aatggaatgaaaggagaaaaaggagactcgggattgccaggtcctcagggtccttccatc
ataggcccaccaggcccaccaggtccccatggcccaccaggccccatgggaccccatgga
cttcctggaccaaagggtgaaccagggttaaatggtgttaaaggattgaagggtgaacca
ggtcaaaagggtgacagaggaccccttggtcttccaggagcatctggcttagacggaaag
ccaggatcccggggtacagatggccctatgggaccccatggccccgcaggtcccaaagga
gaaagaggtgaaaaaggagctatgggagagccgggaccccgaggaccgtatggtcttccc
ggtttccctggtccacgaggcgagaagggtgatctaggagaaaagggggaaaaggtgacc
tctccagcctag
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