Phocoena phocoena (harbor porpoise): 136123418
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Entry
136123418 CDS
T11058
Symbol
NUP54
Name
(RefSeq) nucleoporin p54
KO
K14308
nuclear pore complex protein Nup54
Organism
pphc Phocoena phocoena (harbor porpoise)
Pathway
pphc03013
Nucleocytoplasmic transport
pphc05014
Amyotrophic lateral sclerosis
Brite
KEGG Orthology (KO) [BR:
pphc00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
136123418 (NUP54)
09160 Human Diseases
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
136123418 (NUP54)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pphc03019
]
136123418 (NUP54)
Messenger RNA biogenesis [BR:
pphc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
136123418 (NUP54)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup54
Nup54_C
DUF892
Motif
Other DBs
NCBI-GeneID:
136123418
NCBI-ProteinID:
XP_065733691
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All DBs
Position
5:46377034..46407789
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AA seq
509 aa
AA seq
DB search
MAFNFGAPSGTSGTAAATAAPAGGFSGFGTPSTTAGSAFSFSAPSNTGTTGLFGGTQNKG
FGFGTGFGTTAGTSTGLGTGLGTGLGFGGFHTQQQQQQQSTLGGLFSQPTQAPAQSNQLI
NTASALSAPTLLGDERDAILAKWNQLQAFWGTGKGYFNSNIPPVEFTQENPFCRFKAVGY
SCMPNNKDEDGLVVLVFNKKETDIRSQQQQLVESLHKVLGGNQTLTVNVEGIKTLPDDQT
EVVIYVVERSPNGTSRRVPATTLYAHFEQTNIKTQLQQLGVTLSMTRTELSPAQIKQLLQ
NPPAGVDPIIWEQAKVDNPDSEKLIPVPMVGFKELLRRLKVQDQMTKQHQTRLDIISEDI
GELQKNQTTTMAKIAQYKRKLMDLSHRTLQVLIKQEIQRKSGYAIQADEEQLRVQLDTIQ
CELNAPTQFKGRLNELMSQIRMQNHFGAVKSEERYYIDADLLREIKQHLKQQQEGLSHLI
SIIKDDLEDIKLVEHGLNETIHIRGGVFS
NT seq
1530 nt
NT seq
+upstream
nt +downstream
nt
atggccttcaactttggggctccctcgggcacctctggtacagctgcagccaccgcggcc
cctgcgggtgggtttagtggatttgggacaccgtctacaacagcaggttctgcattcagc
ttttctgctccatctaacacgggcactactggactcttcggtggtactcagaacaaaggt
tttggatttggcactggctttggcacaacagctggaactagtactggtttaggtactggt
ttgggaactggacttggatttggaggatttcatacacagcagcagcagcagcaacaaagt
acattaggtggtctcttcagccagcctacacaagctcctgcccagtccaaccaactgata
aatactgcaagtgctctttctgctccaacactactgggagatgagagagatgctattttg
gcaaaatggaatcaactacaggccttttggggaacaggaaaaggatatttcaacagtaac
attccaccagtggaattcacacaagaaaacccattttgccgttttaaggcagtaggttat
agttgtatgcccaataataaagatgaagatgggctagtggttttagttttcaacaaaaaa
gaaacagatattcgaagccagcaacagcaattggtagaatcattgcataaagtattggga
ggaaaccagacccttactgtaaatgtagagggcattaaaacattgccagatgatcagaca
gaagttgtcatttatgttgttgagcgttctccaaatggtacttcaagaagagttccagct
acaacactatatgcccattttgaacaaaccaatataaaaacacagttgcagcaacttggt
gtaaccctttctatgactagaacagaactttctcctgcacagatcaaacagcttttacag
aatcctcctgctggtgttgatccaattatctgggaacaagccaaggtggataaccctgat
tctgaaaagttaattcctgtaccaatggtgggtttcaaagaacttcttcgaagactgaag
gttcaagatcagatgactaagcagcatcagaccagattagatatcatatctgaagatatt
ggtgaattacagaagaatcaaactacaactatggccaaaattgcacaatacaagaggaaa
ctcatggacctttcccatagaaccttacaggtcctcatcaaacaggaaattcagaggaag
agtgggtatgccatccaagctgatgaagagcagttgcgagttcagctagatacaattcag
tgtgaactaaatgcccctactcagtttaagggccgactgaatgaactgatgtcccagatc
aggatgcagaatcattttggagcagtcaaatctgaagaaagatattacatagatgcagat
ctgttgcgagaaatcaagcagcatttgaaacaacaacaggaaggccttagccacttgatt
agcatcataaaagatgacttagaagatatcaagttggtagaacatggattgaatgaaacc
atccacatcagaggtggtgtcttcagttga
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