Phocoena phocoena (harbor porpoise): 136123599
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Entry
136123599 CDS
T11058
Symbol
POLR2B
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
pphc Phocoena phocoena (harbor porpoise)
Pathway
pphc03020
RNA polymerase
pphc03420
Nucleotide excision repair
pphc05016
Huntington disease
Brite
KEGG Orthology (KO) [BR:
pphc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
136123599 (POLR2B)
09124 Replication and repair
03420 Nucleotide excision repair
136123599 (POLR2B)
09160 Human Diseases
09164 Neurodegenerative disease
05016 Huntington disease
136123599 (POLR2B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pphc03021
]
136123599 (POLR2B)
03400 DNA repair and recombination proteins [BR:
pphc03400
]
136123599 (POLR2B)
Enzymes [BR:
pphc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
136123599 (POLR2B)
Transcription machinery [BR:
pphc03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
136123599 (POLR2B)
DNA repair and recombination proteins [BR:
pphc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
136123599 (POLR2B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
DUF5817
Motif
Other DBs
NCBI-GeneID:
136123599
NCBI-ProteinID:
XP_065733993
LinkDB
All DBs
Position
5:complement(62631711..62677696)
Genome browser
AA seq
1174 aa
AA seq
DB search
MYDADEDMQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVE
DAPPIDLQAEAQHASGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTY
SAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLD
PGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSML
ARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEM
VKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETK
KAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQ
KFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLS
HLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSP
ILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSE
VSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASG
VVEYIDTLEEETVMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSP
RNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIV
AIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQGM
RHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELEGTNRRYTKRDCSTFLRTSE
TGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEG
ITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLSDYGY
HLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSR
DGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGC
RNKTQISLVRMPYACKLLFQELMSMSIAPRMMSV
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgtatgacgcggacgaggatatgcaatatgatgaggatgatgatgaaatcacaccagat
ttgtggcaagaggcatgctggattgtaattagttcctattttgatgagaaaggcttggtc
agacaacagctggattcttttgatgagtttattcagatgtctgttcaaagaattgtggaa
gatgctccacctatagacctacaagccgaagctcagcatgctagtggagaagttgaagaa
ccgccaagatacttgctgaagttcgaacaaatttacctctccaagcctacccattgggaa
agagatggtgctccatcaccgatgatgccaaatgaggccagattaagaaatctcacgtac
tctgctccactttatgttgatataacaaaaacagtcattaaagaaggcgaagaacaactt
cagacacagcatcagaaaacttttataggaaaaattccaattatgttgcgttcaacttac
tgcctattgaatggcttaacagatcgtgatctttgtgagttaaatgaatgccccttggat
cctggtggctacttcattattaatggatctgaaaaggttctgattgctcaagagaaaatg
gcaacaaacacagtctatgtgtttgccaaaaaggattctaaatatgcctacacaggagag
tgtagatcatgtctggagaattcttctcgacccaccagtactatctgggttagcatgctg
gcaagaggaggacagggtgcaaaaaagagtgctattggtcagcgcattgtggcaacccta
ccatatatcaagcaagaagttcccatcattattgtgttcagagccttaggttttgtgtct
gacagagatattttagagcatattatttatgattttgaagatccagagatgatggaaatg
gttaaaccttctctcgatgaagcttttgtcatccaagaacagaatgtcgcactaaatttc
attggttcaagaggggcaaagcctggtgtcaccaaagagaaaaggattaaatatgcaaag
gaagtattacagaaagaaatgctccctcatgttggcgtcagtgatttttgtgagaccaag
aaagcttatttcttggggtacatggttcataggttgctgctagcagctttgggtagaaga
gaattagatgacagagatcattatggaaacaaaagattggaccttgctggaccactactt
gcattcttatttagaggaatgtttaagaatttgcttaaagaagtacggatctatgcccag
aagttcattgatcgaggaaaggattttaacttggagttggcaattaagacaaggattata
tctgatggcctaaaatactctttagctactgggaactggggtgaccaaaagaaagctcat
caagccagagctggagtatctcaggtattaaaccgcctgacttttgcatctactctttct
cacctgcgtcgtttaaattctcccattggtagagatggcaagctagcaaaaccaagacag
ttgcataatacgttgtggggaatggtgtgtcctgctgagactccagagggccatgctgta
ggacttgtgaagaatttagctctgatggcttatatttcagttggatctcagccttctcca
atcctggaatttttagaagaatggagtatggaaaatttagaagaaatttctcctgcagct
attgctgatgcaaccaagatttttgttaatggctgctgggttggaatacataaagatcct
gaacaacttatgaacactctacggaaattgaggcgtcagatggacatcattgtgtctgaa
gtttctatgatcagagatattcgagagagggagattcggatctatacagatgcaggccgt
atttgtagaccacttctgattgtggaaaaacaaaagctacttttgaagaagagacacatt
gatcaattgaaagagagagaatataacaactacagttggcaggatcttgtggccagtggg
gtagtagaatatattgatactctagaagaagaaacagtgatgctcgcaatgaccccagat
gatttacaagagaaagaagtagcttattgttccacatatacgcactgtgagattcatcca
tcaatgattcttggtgtctgtgcatctattattccttttcctgatcataaccagtcccct
agaaacacataccagtctgctatgggtaagcaggctatgggggtttatattaccaacttt
catgttcgtatggatacgttggcccatgttctctattatcctcaaaaaccacttgtgact
acacggtcaatggaatacctacgatttagagagctgccagcaggtatcaactcaattgtg
gccattgcatcatacactggatataatcaagaagactctgttatcatgaatcgttcagct
gtagaccgaggctttttcaggtctgttttctatcgatcatacaaagaacaggagtctaaa
aaagggtttgatcaagaagaagtttttgagaagcctacacgtgaaacttgccagggtatg
aggcatgctatttatgacaagctggatgatgatggtttgatagctcctggggttcgtgta
tcaggagatgatgttattataggcaaaacagtcacgttgcctgaaaatgaagatgaattg
gagggcactaatagacgctatactaagagagactgtagcacttttctcaggactagtgag
acgggcattgtggatcaggttatggtaactctgaaccaagaaggatataaattttgtaaa
ataagggtacgctctgttagaattccacagattggagacaaatttgctagtcgacatggt
caaaagggtacttgtggtattcagtatagacaagaggatatgcctttcacctgcgaaggt
atcacccccgatatcatcataaatccccatgccattccctctcgtatgactattggtcac
ttgattgaatgtcttcaagggaaggtatcagctaacaagggtgaaattggtgatgccact
ccattcaatgatgctgttaatgtacagaagatttctaatcttttatctgattatggctac
catctcagaggaaatgaggtcctatacaatggattcactggtcgaaaaatcacatcacaa
atttttattggccccacttactaccagcgtttgaaacacatggtggatgataagattcat
tctcgtgctcggggacctattcagatccttaataggcagcccatggagggtagatctcgt
gatggtggcctgcgttttggagaaatggaacgagattgtcagattgcccacggagcagcc
cagtttttaagggaaagactgtttgaggcatcagacccatatcaggttcatgtttgcaat
ctttgtggaataatggcaatcgctaacacgaggacccatacgtatgaatgcaggggctgc
cgaaataaaacccagatctctttggtgcgaatgccttatgcatgcaaactgttgtttcag
gaactcatgtctatgagtattgcacctcgaatgatgagtgtttag
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integrated database retrieval system
