Phocoena phocoena (harbor porpoise): 136124123
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Entry
136124123 CDS
T11058
Symbol
ABCA1
Name
(RefSeq) phospholipid-transporting ATPase ABCA1
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
pphc Phocoena phocoena (harbor porpoise)
Pathway
pphc02010
ABC transporters
pphc04148
Efferocytosis
pphc04975
Fat digestion and absorption
pphc04979
Cholesterol metabolism
pphc05417
Lipid and atherosclerosis
Brite
KEGG Orthology (KO) [BR:
pphc00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
136124123 (ABCA1)
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
136124123 (ABCA1)
09150 Organismal Systems
09154 Digestive system
04975 Fat digestion and absorption
136124123 (ABCA1)
04979 Cholesterol metabolism
136124123 (ABCA1)
09160 Human Diseases
09166 Cardiovascular disease
05417 Lipid and atherosclerosis
136124123 (ABCA1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
pphc02000
]
136124123 (ABCA1)
Transporters [BR:
pphc02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
136124123 (ABCA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
DrrA1-3_C
AAA_23
Motif
Other DBs
NCBI-GeneID:
136124123
NCBI-ProteinID:
XP_065734607
LinkDB
All DBs
Position
6:complement(87499803..87615790)
Genome browser
AA seq
2261 aa
AA seq
DB search
MACWPQLRLLLWKNLTFRRRQTCQLLLEVAWPLFIFLILISVRLSYPPYEQHECHFPNKA
MPSAGTLPWVQGIICNANNPCFRYPTPGEAPGVVGNFNKSIVSRLFSDARRLLLYSHRDT
SMKNIRQVLRTLYQIERSSSGLKFQDFLVDNETFSGFLHHNLSLPRPTVDKILGAGVSLR
KVFLQGYQLHLTNLCNGSKLGELIQLGDQEVSMLCSLPKEKLDAAEQILHSNLDILKPIL
TELNSTSPFPIKELAEATKALLDSLGIVAQELFSMRSWTDMRQEVMFLTNANSSSSPTQI
YQAVSRIVCGHPEGGGLKIKSLNWYEDNNYKALFGGNGTEDDAGTFYDNSTTPYCNDLMK
NLESSPLSRIIWKALKPLLVGKILYTPDTPVTKQVMAEVNKTFQELAVFHDMEGMWQELS
PKIWTFMESSPEMDLVRTLLDSRGNDHFWEQRLEGLDWTAKDIVAFLAKHPEEVQSTNGS
VYTWREAFNETNQAIRTISRFMECVNLNKLEPVATEVLLINKSMELLDERKFWAGIVFTG
IAPGSVELPHHVKYKIRMDIDNVERTNKIKDGYWDPGPRADPFEDMRYVWGGFAYLQDVV
EQAIIRVLTGTEKKTGIYMQQMPYPCYVDDIFLRVMSRSMPLFMTLAWIYSVAVIIKGIV
YEKEARLKETMRIMGLDNSILWFSWFLSSLIPLLVSAGLLVVILKLGNLLPYSDPSVVFV
FLSMFAVVTILQCFLISTLFSRANLAAACGGIIYFMLYLPYVLCVAWQDYVGFTLKIFAS
LLSPVAFGFGCEYFALFEEQGIGVQWDNLFESPVEEDGFNLTTSVSMMLFDAFLYGVMTW
YTEAVFPGQYGIPRPWYFPCTKSYWFGEEGNEKSQPGFSQKGTSEICMEEEPTHLKLGVS
IQNLMKVYRDGMKVAVDGLALNFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYIL
GKDIRSEMSTIRQNLGVCPQHNVLFDMLTVEEHIWFYARLKGLSEKHVKAEMEQMALDVG
LPPSKLKSKTSQLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYSRRGIWELLLKYRH
GRTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLFLKNQLGTGYYLTLVKKDVESSLS
SCRNSSSTVSYLKKEDSVSQSSSDAGLGSDHESDTLTIDVSAISNLIRKHVAEARLVEDI
GHELTYVLPYEAAKEGAFVELFHEIDDRLSDLGISSYGISETTLEEIFLKVAEESGVDAE
TSDGTLPARRNRRVFGDKQSCLRPFTEDDAVDPNDSDIDPESRETDLLSGMDGKGSYQVK
GWKLTQQQFGALLWKRLLIAKRSRKGFFAQIVLPAVFVCIALVFSLIVPPFGKYPSLELQ
PWMYNEQYTFVSNDAPEDVSTQELLSALTGEPGFGTRCMEGNPIPDMPCSVGEEEWTTTP
VPQTITELFRNGNWTMENPSPACQCSSDRIKKMLPVCPLGAGGLPPPQRKQNTADILQNL
TGRNISDYLVKTYVQIIAKSLKNKIWVNEFRYGGFSLGASNSHTLPPSEAVNDAIKQMKK
HLKVAKDSSADRFLSSLGRFMTGLDTKNNVKVWFNNKGWHAISSFLNVINNAILRANLQK
GENPSKYGITAFNHPLNLTKQQLSEVALMTTSVDVLVSICVIFAMSFVPASFVVFLIQER
VSKAKHLQFISGVKPVIYWLSNFVWDMCNYVVPATLVIIIFICFQQKSYVSSTNLPVLAL
LLLLYGWSITPLMYPASFVFKIPSTAYVVLTSVNLFIGINGSVATFVLELFTNNKLNNIN
DILKSVFLIFPHFCLGRGLIDMVKNQAMADALERFGENRFVSPLSWDLVGRNLFAMAVEG
VVFFLITVLIQYRFFIRPRPVKAKLLPLNDEDEDVRRERQRILDGGGQNDILEVKELTKV
YRRKRKPAVDRICIGIPPGECFGLLGVNGAGKSSTFKMLTGDTSVTRGDAFLNKNSILSN
IHEVHQNMGYCPQFDAITELLTGREHVEFFALLRGVPEREVGKVGEWAIRKLGLVKYGEK
YAGDYSGGNKRKLSTAMALIGGPPVVFLDEPTTGMDPKARRFLWNCALSIIKEGRSVVLT
SHSMEECEALCTRMAIMVNGRFRCLGSVQHLKNRFGDGYTIVVRIAGSNPDLKPVQEFFE
LAFPGSVLKEKHRNMLQYQLPSSLSSLARIFSILSQSKKRLHIEDYSVSQTTLDQVFVNF
AKDQSDDDHLKDLSLHKNQTVVDVALLTSFLQDEKVKESYV
NT seq
6786 nt
NT seq
+upstream
nt +downstream
nt
atggcttgttggcctcagctgaggttgctgctgtggaagaatctcactttcagaagaaga
caaacatgtcagctgttgctggaagtggcctggcctctgtttatcttcctgatcctgatc
tccgtgaggctgagctacccaccctatgaacaacatgaatgccactttccaaacaaagcc
atgccctctgcaggaacacttccttgggttcaggggattatctgtaatgccaataacccc
tgtttccgttatccgactcctggtgaggcacccggggttgttggaaactttaacaagtcc
attgtgtctcgcctgttctcagatgctcggcgacttcttttgtacagccacagagacacc
agcatgaagaacatacgccaagttctaaggacattataccagatcgagcgttccagctca
ggcttgaagtttcaggacttcctggtagacaatgaaaccttctctggattcctgcatcac
aacctttctctgccaaggccaactgtggacaagatactgggggctggtgtcagtctccgc
aaggtatttttgcaaggctaccagttacatttgaccaatctgtgcaatggatcaaaatta
ggagagctgattcaacttggtgaccaagaagtctccatgctttgcagcctgccaaaggag
aaactggatgcagcagagcaaatacttcattccaacctggacattctgaagccgatcttg
acagaactaaactccacatctcccttccccatcaaggagctggctgaagccacaaaagct
ttgctggatagtcttgggattgtggctcaagagctcttcagcatgaggagctggactgac
atgcggcaggaggtgatgtttctgaccaacgcgaacagctccagctcccccacccagatc
taccaggccgtgtcccgcatcgtctgcggccatcccgagggtgggggcctgaagataaag
tcccttaactggtatgaggacaacaactacaaagccctctttggaggcaacggcactgag
gacgacgctggcaccttctatgacaattctaccactccttattgcaatgatttgatgaag
aatctggagtccagtcctctttcccgcatcatatggaaagctctcaagcccctgcttgtt
gggaagatcctgtatacacctgacactccagtcacaaagcaggttatggctgaggtgaat
aagaccttccaggaactggctgtgtttcatgatatggaaggcatgtggcaagagctgagc
cccaagatctggaccttcatggagagcagcccagaaatggaccttgtccggacgcttttg
gacagcagaggcaatgaccacttttgggaacagcgattggaaggcttagattggacagcc
aaagatatcgtggcatttctggccaagcacccagaagaagtgcagtccactaatggctct
gtgtacacctggagagaagccttcaatgagaccaaccaggcaatccggaccatctctcgc
ttcatggagtgtgtgaacctgaacaagctggaaccagtggcaacagaggttctgctcatc
aacaagtccatggagctactggatgagcggaagttctgggctgggatcgtgttcactgga
attgctcctggcagtgttgagctgccccatcacgtcaagtacaagatccggatggatatt
gacaatgtggagaggacgaataagatcaaggatgggtactgggaccccggtcctcgggct
gacccctttgaggatatgcggtacgtctgggggggcttcgcgtacttgcaggatgtggtg
gagcaggcaatcatccgggtgctgacgggcacagagaagaaaactggcatctacatgcag
cagatgccttacccctgttacgttgatgacatcttcctgcgggtcatgagccggtcaatg
cccctcttcatgacgttggcctggatttactctgtggctgtgatcatcaagggcatcgtg
tacgagaaggaggcgcggctgaaggagaccatgcgcatcatgggcctggacaacagcatc
ctgtggttcagctggttcctcagcagcctcatccccctgctcgtgagcgccggcctgctg
gtggtcatcctgaaattaggaaacctgctgccctacagcgaccccagcgtggtgtttgtc
tttctgtccatgttcgccgtggtgaccatactgcagtgctttctgatcagcacgctcttc
tccagagccaacctggcggcagcctgtggaggcatcatttacttcatgctgtacctgccc
tacgtcctgtgcgtggcgtggcaagactacgtgggcttcacactcaagatctttgcgagc
ctgctgtctcctgtggcttttgggtttggctgtgagtactttgccctttttgaggagcag
ggcattggggtgcaatgggacaacctttttgagagccccgtggaggaagatggcttcaac
ctcaccacctcggtctccatgatgctgtttgacgccttcctctacggggtgatgacgtgg
tacaccgaggctgtgtttccaggccaatatggaatccccaggccctggtatttcccttgt
actaagtcctactggtttggtgaggaaggcaatgagaagagccagcctggtttcagccag
aagggaacatcagaaatctgcatggaggaggaacccacccacctgaagctgggcgtgtcc
attcagaacctgatgaaggtttaccgagatggcatgaaggtggcggttgacggcctggcc
ttgaatttctatgagggccagatcacctccttcctgggccacaatggagctgggaagacc
accaccatgtcaatcctgaccgggttgttccctcccacctcgggcactgcctacatcctg
gggaaagacattcgctccgagatgagcaccatccgtcagaacctgggggtctgtccccag
cataacgtgctgtttgacatgctgactgttgaagagcacatctggttttacgcccgcctg
aaagggctctcggagaagcacgtgaaagcagagatggagcagatggccctggatgttggt
ttgccgccaagcaaactgaaaagcaaaacaagtcagctgtcaggtggaatgcagcgaaag
ctgtctgtggccttggcctttgttgggggatccaaggttgtcattctggatgagcccaca
gccggcgtggacccttactcccgcaggggaatatgggaactgctgctgaaatatcgacac
ggccgcaccattattctctccacacaccacatggatgaagcggacatcctgggggacagg
attgccatcatttcccatgggaagctgtgctgcgtgggctcctccctgttcctgaagaac
cagctggggacaggttactacctgaccctggtcaagaaggatgtggagtcctccctcagc
tcgtgcagaaatagcagtagcactgtgtcgtacctgaaaaaggaggacagtgtttctcag
agcagttctgatgctggcctgggcagtgaccatgaaagtgacacgctgaccatcgatgtc
tccgcgatctccaacctcatcaggaagcatgtggccgaggcccggctggtggaagacatt
ggccatgagctgacctacgtgctgccctatgaagccgccaaagagggagcctttgtggaa
ctcttccatgagattgatgaccggctctcagacctgggcatctccagttatggaatctca
gagactaccctggaagaaatatttctcaaagtggctgaagagagtggggtggatgctgag
acctcagatggcaccctaccggcaagacggaacagacgggtcttcggggacaagcagagc
tgtcttcgcccatttactgaggatgatgctgttgatccaaatgattccgacatagatcca
gaatccagagaaacagacctgctcagcgggatggacggcaaaggctcctaccaggtgaag
ggctggaaactcacacagcagcagtttggggcccttttgtggaagaggctgctgattgcc
aaacggagtcggaagggattctttgctcagattgtcctgccggctgtgtttgtctgcatc
gccctggtgttcagcttgatcgtgccaccctttggcaagtaccccagcctggaacttcag
ccctggatgtacaacgaacagtacacatttgtcagtaatgatgcccctgaggatgtgagc
acgcaggaactcctgagcgctctcaccggagagcctggcttcgggacccgatgtatggaa
ggaaacccaatcccagacatgccctgctcggtgggggaggaggaatggaccaccaccccc
gtcccccagaccatcacggagctcttccgaaacgggaactggacgatggagaacccctcc
cctgcctgccagtgtagcagcgacagaatcaagaagatgctgcccgtgtgtcccctgggg
gctggggggctgcctcctccacaaagaaaacagaacactgcggacatccttcagaacctg
acgggaagaaacatttcggattatctggtgaagacatatgtgcagatcatagccaaaagc
ttaaagaacaagatttgggtgaatgagtttaggtacggtggattttccctgggtgccagt
aattctcacacacttcctccgagtgaagcagttaatgatgccatcaagcaaatgaagaaa
cacttgaaggtggccaaggacagttctgcagatcgatttctcagcagcttgggaaggttc
atgacaggactggacacgaaaaataacgtcaaggtgtggttcaacaacaagggctggcac
gccatcagctctttcttgaatgtcatcaacaatgctattctccgggccaacctgcagaag
ggagagaaccctagcaagtatgggattactgccttcaatcaccccctgaacctcaccaag
cagcagctctcggaagtggctctgatgaccacatcagtggacgtccttgtgtccatctgt
gtcatctttgcgatgtccttcgtcccagccagctttgtcgtgttcctgatccaggagcgg
gtcagcaaagcgaagcacctgcagttcatcagtggagtgaagcctgtcatctactggctc
tccaattttgtctgggacatgtgcaactatgtggtccctgccacgctggtcatcatcatc
ttcatctgcttccagcagaagtcctatgtgtcctccaccaacctgcctgtgctagccctt
ctactgttgctgtatgggtggtccatcacacctctcatgtacccagcctccttcgtgttc
aagatccccagcacagcctacgtggtcctcaccagcgtgaacctcttcatcggcatcaat
ggcagcgtggccacttttgtgctggagctcttcaccaacaataagctgaataacatcaat
gatatcctgaagtcggtgttcttgatcttcccacatttttgcctgggacgggggctcatt
gacatggtgaaaaaccaggcaatggctgatgccttggaaaggtttggggagaatcgcttt
gtctcgccgctgtcttgggacttggtgggacgaaacctcttcgccatggctgtggaaggg
gtggtgttcttcctcatcactgtgttgatccagtaccgattcttcatcaggcccagacct
gtaaaggcaaagcttcttcctctgaatgatgaggatgaagatgtgaggagggagagacag
agaattcttgatggtggaggacagaatgacatcttggaagtcaaggagctgactaaggta
tatagaaggaagaggaaacctgccgttgacaggatttgcattggcattcctcctggtgag
tgctttggacttctaggtgtcaatggggctgggaaatcatcaactttcaagatgttaacg
ggagataccagtgttaccagaggagatgcttttcttaacaaaaacagtatcttatcaaac
atccacgaagtacatcagaacatgggctattgccctcagttcgatgccatcacagagctg
ctgactggaagagagcacgtggagttctttgcgctcttgagaggcgtcccagagagagaa
gtcggcaaggttggtgagtgggcaattcggaaactcggcctcgtgaagtatggagaaaag
tatgctggggactatagcggaggcaacaagcgcaagctctcgacggccatggcattgatt
ggcgggcctcctgtggtgtttctggatgaaccgaccacaggcatggaccccaaagcccgg
cgattcttgtggaattgtgccttaagtatcatcaaggaagggagatcagtagtgcttaca
tctcatagcatggaagaatgcgaagctctttgcactaggatggcaattatggtcaatggg
cggttcaggtgtcttggcagtgtccaacatctgaaaaataggtttggagatggttataca
atagtcgtacgaatagcagggtccaaccctgacctgaagcctgtccaggagttctttgaa
ctcgccttcccgggaagcgtgctgaaggagaagcaccggaacatgctgcagtaccagctc
ccctcttcactgtcttccctggccaggattttcagcatcctttcccagagcaaaaagcga
ctccacatagaagactactctgtctctcagacaacacttgaccaagtatttgtaaacttt
gccaaggaccaaagtgatgatgaccacttaaaggacctgtcattacacaaaaaccagaca
gtagtggatgttgcacttctcacatcttttctgcaggacgagaaagtgaaagaaagttat
gtatga
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integrated database retrieval system
