Phocoena phocoena (harbor porpoise): 136124425
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Entry
136124425 CDS
T11058
Symbol
NCBP1
Name
(RefSeq) nuclear cap-binding protein subunit 1
KO
K12882
nuclear cap-binding protein subunit 1
Organism
pphc Phocoena phocoena (harbor porpoise)
Pathway
pphc03013
Nucleocytoplasmic transport
pphc03015
mRNA surveillance pathway
pphc03040
Spliceosome
pphc05014
Amyotrophic lateral sclerosis
Brite
KEGG Orthology (KO) [BR:
pphc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
136124425 (NCBP1)
09122 Translation
03013 Nucleocytoplasmic transport
136124425 (NCBP1)
03015 mRNA surveillance pathway
136124425 (NCBP1)
09160 Human Diseases
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
136124425 (NCBP1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pphc03019
]
136124425 (NCBP1)
03041 Spliceosome [BR:
pphc03041
]
136124425 (NCBP1)
Messenger RNA biogenesis [BR:
pphc03019
]
Eukaryotic type
mRNA processing factors
5' end processing
Cap binding complex
136124425 (NCBP1)
Spliceosome [BR:
pphc03041
]
Common components
Common spliceosomal components
Cap binding complex
136124425 (NCBP1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G_like_2
MIF4G
MIF4G_like
Cob_adeno_trans
Motif
Other DBs
NCBI-GeneID:
136124425
NCBI-ProteinID:
XP_065735206
LinkDB
All DBs
Position
6:81467167..81510320
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AA seq
790 aa
AA seq
DB search
MSRRRHSDENDGGQPHKRRKTSDANETEDHLESLICKVGEKSACSLESNLEGLAGVLEAD
LPNYKSKILRLLCTVARLLPEKLTIYTTLVGLLNARNYNFGGEFVEAMIRQLKESLKANN
YNEAVYLVRFLSDLVNCHVIAAPSMVAMFENFVSVTQEEDVPQVRRDWYVYAFLSSLPWV
GKELYEKKDAEMDRIFANTESYLKRRQKTHVPMLQVWTAEKPHPQEEYLDCLWAQIQKLK
KDRWQERHILRPYLAFDSILCEALQHNLPPFTPPPHTEDSVYPMPRVIFRMFDYTDDPEG
PVMPGSHSVERFVIEENLHCIVKSHWKERKTCAAQLVSYPGKNKIPLNYHIVEVIFAELF
QLPAPPHIDVMYTTLLIELCKLQPGSLPQVLAQATEMLYMRLDTMNTTCVDRFINWFSHH
LSNFQFRWSWEDWSDCLTQDPESPKPKFVREVLEKCMRLSYHQRILDIVPPTFSALCPAN
PTCIYKYGDESSNSLPGHSVALCLAVAFKSKATNDEIFSILKDVPNPNQDDDDDEGFSFN
PLKIEVFVQTLLHLAAKSFSHSFSALAKFHEVFKTLAESDEGKLHVLRVMFEVWRNHPQM
IAVLVDKMIRTQIVDCAAVANWIFSSELSRDFTRLFVWEILHSTIRKMNKHVLKIQKELE
EAKEKLARQHKRRSDDDDRSSDRKDGALEEQIERLQEKVESAQSEQKNLFLVIFQRFIMI
LTEHLVRCETDGTSVLTPWYKNCIERLQQIFLQHHQIIQQYMVTLENLLFTAELDPHILA
VFQQFCALQA
NT seq
2373 nt
NT seq
+upstream
nt +downstream
nt
atgtcacggcgacggcacagcgacgagaacgatgggggacagcctcacaaaagaagaaag
acctctgatgcaaatgaaactgaagatcatttggaatctttaatatgcaaagtaggagaa
aagagtgcctgctctttggagagcaacctagaaggcttggctggcgttttggaagctgat
cttcctaactataagagcaagatcttaagacttctttgtacagttgcacgtctgttacct
gagaagttgacaatttatacaacattagttggactactaaatgccaggaattacaacttc
ggtggagaatttgtagaagccatgattcgtcaacttaaagaatcgttgaaagcaaacaat
tataatgaagctgtatatttggtccgttttttatctgatcttgtgaattgtcacgtcatt
gctgccccatcaatggttgctatgtttgaaaattttgtaagtgtaactcaggaagaagat
gtgcctcaggtgcgccgggattggtacgtgtatgcatttctatcatctttgccctgggtt
ggaaaggagttgtacgaaaagaaagatgcagagatggaccgaatctttgccaacactgaa
agctatcttaaaagacgccagaagactcatgtgcccatgttacaagtatggactgcggag
aaaccgcatccacaagaagagtatttagattgcctctgggcccagattcagaaattgaaa
aaggatcgctggcaggagcggcacatcctaagaccttatcttgcctttgacagcatcctg
tgtgaagcactgcagcacaacctgcctcctttcacaccacctcctcacactgaagattcg
gtgtacccgatgccaagggtcatcttcagaatgtttgattacacggatgatcctgagggt
cctgtaatgccagggagtcattcagtggaaagatttgtgatagaagagaatcttcactgc
atcgttaagtcccactggaaggaaaggaagacttgtgctgcacagctagtgagttatcct
gggaagaacaagatccccttgaactaccacatagttgaggtgatctttgcagagctgttt
caacttccagcaccccctcacattgatgtgatgtacacaacacttctcattgaactgtgt
aaacttcagcctggctctctaccccaagttcttgcacaggcaactgaaatgttatacatg
cgtttggacacaatgaatactacatgtgtagacaggtttattaattggttttcccatcat
ctaagtaacttccagttccgttggagctgggaagattggtcagattgtcttactcaagat
ccagaaagtcccaaaccaaagtttgtaagagaagttctagaaaaatgtatgaggttgtct
taccatcagcgtatattagatattgtccctcctaccttctcagctctatgtcctgcaaac
ccaacctgcatttacaagtatggagatgaaagtagcaactctcttcctggacattcggtt
gccctctgtttagctgttgcttttaaaagtaaagcaaccaatgatgaaatcttcagcatt
ctgaaagatgtaccaaatcctaaccaggatgacgatgatgatgaaggattcagctttaac
ccattgaaaatagaggtctttgtacagactctgctacacttagcagccaagtcattcagc
cactccttcagtgctcttgcaaagtttcatgaagtcttcaaaaccctagctgaaagtgat
gaaggaaaattacatgttctaagagtcatgtttgaggtctggcggaaccatccacagatg
attgctgtactagtagataagatgattcgtacacagattgttgactgtgctgcagtagca
aattggatcttctcttcagaactatctcgtgactttactagattgtttgtttgggaaatc
ttgcactccacaattcgtaagatgaacaaacacgttcttaagatccagaaggagctagaa
gaggctaaagaaaaactcgcaaggcaacataaacggcgaagtgacgatgatgacagaagc
agtgacaggaaagatggggctcttgaggaacaaatagaaagactgcaggagaaagtggaa
tctgctcagagtgaacaaaagaatctcttccttgtcatatttcagcgttttatcatgatc
ttgactgagcacttggtacgatgtgaaactgacgggaccagtgtattaacaccgtggtat
aagaactgtatagagaggctccagcagatcttcctacagcatcaccaaataatccagcag
tacatggtgaccctggagaacctgctcttcactgctgaattagaccctcatatcctggct
gtgttccagcagttctgtgccctgcaggcctaa
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