Phocoena phocoena (harbor porpoise): 136124487
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Entry
136124487 CDS
T11058
Name
(RefSeq) probable ATP-dependent RNA helicase DDX60
KO
K20103
ATP-dependent RNA helicase DDX60 [EC:
5.6.2.7
]
Organism
pphc Phocoena phocoena (harbor porpoise)
Brite
KEGG Orthology (KO) [BR:
pphc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pphc03019
]
136124487
Enzymes [BR:
pphc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
136124487
Messenger RNA biogenesis [BR:
pphc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
136124487
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PIN-like_DDX60
DEAD
ResIII
Helicase_C
Abhydrolase_11
Motif
Other DBs
NCBI-GeneID:
136124487
NCBI-ProteinID:
XP_065735265
LinkDB
All DBs
Position
6:complement(1968539..2046371)
Genome browser
AA seq
1712 aa
AA seq
DB search
MGLEKYLKLLEKMSQLILDQMAEADYDSLLNDFVESEFFLIDGDSLLMTYICEKSLRPEQ
GLHFFYLVECYLVDLIHKGGHFAIVFFKDVEHAYNSIPELLPLRTALILHLQHNTSIDVR
TDFSGCFSQEWKSFLEDSYPYFLIVADESLSHLQVHLFNFLIIQSWAMNVNAVLFSGQAS
DVLRLYAYFMPSKYEHQLIFQKHEKHFENAYKTLMKQLKECRVLALGRLFGNLKWKDMME
EACETISLLKQLWPEGSDIRQVLCVTSCSLSLSLYHHFLENRSKTTDAQKANIQQVETNC
PTLEGVTDWCRLHCLSVAFLLHLPLSQRARTRFITSHWIKDIRTFLTMKKWCEYFILSNI
DVFEFWNLDLTHLSDLSDELLLKNIAFYYENESVQGLHLNLGNGIMKDYEHLWDTVSKLV
TKFDVGKPFPLRTEQFPFLKKDPSPIRDTSKEKMANLGFIPVSCQVVDKFAGDILKDLPF
LTSDDPIVTSLVKQKEFDELVHWHSHRPLSDDYDRTKGQFDEKSRDPRHLRSVQTYHRFQ
QFYGKSLESVTSKFVVPQAIKPRKNFCEPKSKKIQETKAEKITRENKERLFAKEEEKEEK
KWNVLSFSIEEEMKENLNSGIKNLEEFLKSCKSSSVKFRVEMVGITACLRAWKEHCRGEG
ETTKDLSIAVQMMKRIYSVMEKYPELLQEADRQLIARCLRYLGFEELASTLHPAQVTEND
MKEKKKNKYSVGIGPARFQLQYMGQYLVRDERKDPDPRVQDFIPDTWQRELLDVVDKNES
AVIVAPTSSGKTYASYYCMEKVLREGDDGVVVYVAPTKALVNQVAATVENRFSKNLPKGG
SLCGVFTREYRHEALNSQVLVTVPACFEILLLAPHRQAWVKRIRYVIFDEVHCLGGEIGA
EVWEHLLVMIRCPFLALSATISNPEHLTEWLRSIKQYWKQTDSMIEKNTASSRNANCRAS
SHRDYLLRKQSYKVRLVLYAERYNDLEKHVCSVNNHDISFDHFHPCAALTVDHIEKFGFP
SDLTLSPREMIQLYDTMFEFWEGWPRAQELCPEEFVHFKNKIVIRKVDARKYEESLKAEL
TGWVKSGHVKEARMVLRNLRPPSVVSSENMARMFPRLVEKLREMEKLPALFFFFNLGAVE
RSATSVKRFLEIKQQSRRPLKADKEAYDMESKLRKVRKSLETQKTIDKRSQKNPRNMDQS
LIHEAECANLLKRLEKNLEIPQDCTYADQKAIDAETLQRVFNRVKFSRKGAELKALAARG
IGYHHSSLSAKEKQLVEILFRKGFIRVVTATGTLALGINMPCKSVVFAQNSVYLDALNYR
QMSGRAGRRGQDLGGDVYFFGIPLPKVEKLIKSNVPELRGQFPLSISLILRLMLLASKAD
DPEDAKAKVLSVLKHSLISFKQPRALEMLQLYFLFSLQFLVKEGYLDQEGNPTGFAGLVS
HLHYHEPSNFVFVSFLVRGLFHNLCQPTRKGSKHFSQDVMEKLVLVLANLFGRKYLPAKF
QDATLKFYQSKVFLEDLPEDFKAALDEYNTNVTKDFASFLLIVSKLADMKQEHQLPLSKI
DFSGQECEDSQLVSHLMSCKEGRIAISPFACLSGNSDGSLLHLETSDHVTLRTIGVDSTR
APVLWQQEFDHQGRRMQLNAYALDFYKHGSLTGLVQDNRINEGAAYQLLKDFSLTIQSIS
VSLRELCENEEDNVVLAFEQLSETFKEKFENI
NT seq
5139 nt
NT seq
+upstream
nt +downstream
nt
atgggtttagaaaagtacctgaagcttttggagaaaatgtcacagttgattttggatcag
atggcagaagctgattatgacagtctgttgaatgattttgttgagtctgagtttttcctg
attgatggagactcactgctgatgacatacatctgtgagaaatccttgcggcctgaacag
ggcctgcacttcttttacctggttgaatgctaccttgtggatctaattcataaaggagga
cattttgccatcgttttcttcaaggatgttgaacacgcatacaacagcatccccgaactg
cttcctctgagaacggcgttaattctccaccttcagcataataccagcattgatgtccga
acagatttttctgggtgcttctcacaagagtggaaaagtttcttggaagacagttaccca
tattttctgatcgttgccgatgaaagcctgagccatctacaagtacaccttttcaacttt
ttaatcattcagtcctgggcgatgaatgtcaatgccgtgctcttctcgggccaagcatcc
gatgtccttcgactttacgcgtactttatgccgagcaagtacgaacaccagttgattttc
cagaagcatgaaaagcactttgagaatgcttataaaaccctgatgaagcaattgaaggaa
tgtagagttttagcattaggacgtctttttggaaatttaaaatggaaagatatgatggaa
gaggcatgtgaaactatttctctgcttaagcaactgtggccggaaggatctgacattcgg
caagttctttgtgttacttcgtgctccttgtctttgagtttataccatcactttttagag
aacagatcgaagaccactgatgctcagaaagctaacatccaacaggtggagacgaactgc
cccaccctggagggggtgacagattggtgtagactgcactgtctcagcgtggcatttctt
ctccacttacctctttcccaaagagcacgtaccagattcatcacttcccactggattaag
gacattcggactttcttaacaatgaaaaagtggtgtgaatacttcatcctaagtaatata
gacgtttttgaattttggaatctggatttaactcacctttccgacttaagtgatgagctt
ttattgaagaatatagcattttactatgaaaatgaaagtgttcaagggctacatttgaat
ttgggaaacggcattatgaaagattatgaacatctctgggatactgtatcaaagttggtc
acaaagtttgatgttggaaagccatttcctctgagaacagaacaatttccttttcttaaa
aaggatccatcaccaatcagagatacctccaaggaaaagatggctaatttgggttttatt
ccagtgtcatgtcaggtggttgataagtttgccggggacattttgaaagatttgcctttc
ctaacgagcgatgatcctattgtaacttcactggtcaagcagaaagaatttgatgagctt
gtgcactggcattcccacagaccccttagtgatgattatgacaggacaaagggtcagttt
gatgaaaaatctagagatcctcgtcatcttagatctgtgcaaacgtatcatcgttttcaa
caattttatgggaagtcattagaatcagtcacttcaaaatttgttgtacctcaagctatc
aagccaaggaagaatttctgtgaacccaagagcaaaaagatacaggagaccaaggctgaa
aaaattactagagagaataaggagaggctatttgccaaggaggaagaaaaagaagagaaa
aaatggaatgttctgtccttttctattgaggaggaaatgaaagagaatttaaactctgga
ataaagaacctagaagagtttttgaaatcatgtaaaagtagctcagtgaaatttcgagtt
gaaatggtggggattactgcctgcttgagagcgtggaaagaacattgccgtggtgaaggt
gaaaccacaaaagatttaagtatagctgttcaaatgatgaaaaggatctactccgtgatg
gaaaaatacccagaacttttgcaagaggcagatcggcaactcatagccagatgccttagg
tacttaggatttgaggagttggcaagtactttgcatccagcgcaggtcacagaaaatgac
atgaaggagaagaagaagaacaaatactcagttggcattgggccggctcggtttcagctg
cagtacatgggccagtatttggtacgagatgagaggaaagatccagaccccagagtccag
gactttattcctgacacctggcagcgagagctcttggacgtcgtggacaagaatgagtct
gcggtcatagtggcccccacgtcctcagggaagacctacgcctcctactactgcatggag
aaggtgctacgggagggcgacgatggggtggtcgtgtacgtggcccccaccaaggccctt
gtcaatcaggtggcagcaactgttgagaatcgtttcagcaaaaatctgccaaaaggtgga
tctctgtgcggtgtttttacacgggagtatcgtcatgaggctctaaactctcaggtactt
gtcacagtgcctgcctgctttgaaattctgctgctagctccgcatcgccaggcgtgggtg
aaaaggatcagatatgttatatttgatgaggtccactgtcttggtggagaaattggagca
gaagtctgggagcatctccttgtcatgatccgctgtcccttcctggccctttctgctacc
atcagcaacccggagcatctcaccgagtggctacgatccataaaacagtactggaaacaa
acagacagtatgatagaaaaaaatactgcttcttcaagaaatgccaactgccgcgccagt
tctcaccgagactacttactgaggaagcagtcgtataaagtgagacttgtgctctatgca
gagagatacaatgatttagagaagcacgtatgttcagtaaacaatcatgacatctccttt
gaccattttcacccttgcgctgcgctgaccgtggaccatattgaaaagtttggattccct
tctgatcttaccctttcgcctcgagaaatgatccagctttatgataccatgtttgaattc
tgggaaggttggcccagggctcaggagttgtgtccggaggaattcgttcattttaagaat
aaaatagtcattcgaaaggtggatgctagaaagtatgaagagagcctaaaggcagaactg
acgggctgggtgaagagcggtcacgtcaaggaggccagaatggtcctgaggaatcttcgt
cctccttcggtcgttagttcagaaaacatggcacgtatgtttccacgtcttgttgaaaag
ctgagagaaatggagaagttacctgcactgttttttttctttaatttaggggctgtagag
agaagcgctacaagtgtgaaaaggttcctagagataaagcaacagagcagaaggcccctc
aaggctgataaggaggcctatgacatggagagcaaacttcgaaaagttagaaaatccctt
gagacacagaagaccatagataaaagaagccagaaaaatcccagaaatatggatcaaagc
ctaatccatgaagctgaatgtgctaatctcctcaagcgtcttgagaagaacttggagatc
cctcaggactgcacatatgctgatcagaaggccatagatgctgagactttgcagagggtg
tttaaccgagtgaaattctcaaggaaaggcgccgaactgaaggctttggcagcaagaggg
attggatatcatcacagctctttgagcgccaaagaaaagcagttagttgagattcttttt
aggaaaggatttattagggtggtgaccgccacggggacacttgctttaggaatcaacatg
ccttgtaaatctgtggtttttgctcaaaactcagtctatctggatgctttaaactacaga
cagatgtctggacgggccggacgacgaggtcaagacctggggggagatgtgtatttcttt
ggtattccactccctaaagtcgaaaagctcatcaaatccaacgtccctgaactgagaggg
cagttccctctcagcatctccctgatcctgagactcatgcttctggcttccaaggcagat
gaccccgaggacgctaaggcaaaggttctgtcggtgctcaagcactcactgatctccttc
aagcagccccgggcactggagatgctgcaactgtactttctgttctccctgcaattcctg
gtcaaggagggctatttagatcaagaaggtaatcctacaggctttgctggacttgtgtca
catctgcattatcacgagccttccaattttgttttcgtcagttttcttgtaagaggcctt
ttccataatctctgtcagccaaccaggaaaggctcgaaacatttttctcaagatgttatg
gaaaagctagtgttagtattggcaaatctgtttggcagaaaatatcttccagcaaagttc
caagatgctacgctcaagttttatcaatccaaggtgtttctggaggatctccctgaggac
ttcaaggccgctctagatgagtataacacaaacgtgacaaaggactttgcctctttccta
ctgattgtttccaaactggctgatatgaaacaagaacatcagctcccgttgtcaaaaata
gatttctcaggtcaagagtgtgaagactcacaacttgtgtctcacttgatgagctgcaag
gaaggaagaatagccatttctccgtttgcctgtctctctgggaactctgatggcagtttg
cttcatctagaaacttcagaccatgtcactctgcgcaccatcggcgttgatagcactcgg
gctcctgtgctgtggcaacaggaatttgatcaccaaggaagaagaatgcagctcaatgct
tacgcactcgatttctataaacacggttccttgacaggattggtccaggacaacaggata
aatgaaggagctgcttatcagttgttgaaagatttttccctcaccattcaatctatcagt
gtttctttgcgtgaactatgtgaaaatgaagaggacaacgtggtcttagcatttgaacaa
ctgagtgaaacctttaaagaaaaatttgagaacatttga
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integrated database retrieval system
