Phocoena phocoena (harbor porpoise): 136124521
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Entry
136124521 CDS
T11058
Symbol
RP1L1
Name
(RefSeq) retinitis pigmentosa 1-like 1 protein
KO
K19538
retinitis pigmentosa 1
Organism
pphc Phocoena phocoena (harbor porpoise)
Brite
KEGG Orthology (KO) [BR:
pphc00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
pphc03037
]
136124521 (RP1L1)
04812 Cytoskeleton proteins [BR:
pphc04812
]
136124521 (RP1L1)
Cilium and associated proteins [BR:
pphc03037
]
Primary cilia and associated proteins
Other primary cilia associated proteins
136124521 (RP1L1)
Cytoskeleton proteins [BR:
pphc04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Microtubule-associated proteins (MAPs)
136124521 (RP1L1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DCX
DCX2_DCDC1
Motif
Other DBs
NCBI-GeneID:
136124521
NCBI-ProteinID:
XP_065735332
LinkDB
All DBs
Position
6:9150738..9159964
Genome browser
AA seq
1932 aa
AA seq
DB search
MNSTPRDAQAPGHRECLLPSVARTPSVTQVMPAKKITFLKRGDPQFAGVRLAVHRRAFRS
FGALMDELSQRVPLSFGVRSVTTPRGLHGLSTLEQLQDGGCYLCSDKKPPKTPSGPGRPR
GRSPSQQSRDFEGCCEAPGTASSCKSLRAPRRITLVKNGDPRYQQTAVLSHRNLTAFLSK
ASDLLHFPVKQVYTTGGKKVDSLKGLLHSPSVLVCAGHEPFRPLAVEDVRRNGSEPLSGQ
TSRRKSGSWGPKAKQSVIHARSRPGSRPRRCSLLSERSGLGDPSVPLQSACTCPAPDGNP
QGTPGQLSPSVAGEDIEKNVRVNEDGSLSVEMKVRFHLQGEDLLLWSRRVGRASSLTAAS
GVGPVLGQADPLGCVWRGPPRDPSEPGAQGLGPCEAGGVGAFDRGRWQPGSRYEIWMNPL
YAPQGEQTASQRRSGLPQRSHSRTPRSQGVASRKRRSKDSASPSSSDRAPEGSENNSSFC
SRSLEDGVGSCGPRLASGAGESTGEGAMPGLREHRGCLKPGTRGPADAFPDSLASGGSHE
ASSETGELHQGRPSKKSWAAPSWGATQGGGPGSPAVGPSSVRTEGPRAASGEDAGGHRPP
SACASAPGRSRKQQSRAGTLSLPSVSVLSRGSQRDRPGQHHHPKDTHCPLGLPVSRPVPG
PPSRGRARPDSPAPGPSESPHSRGSRASRDPGPCFSATLYSRDTRGSSSIPTTPVSNSDC
ASDFHPPNSPAAETEGDPEFRACSPAPTPSDTSGSFNSQADGLGEKAGGDSPKPSWPLVL
PVGWPEGGRPGVHGASCCSQLGASPALGSPGGKTQSLPASQSWGGQGPFSEACSVCSRYC
PMPRKPRPSGKKHPLRTLSHSEGTHSADGEPGGAEAGEEKLDVWRPRPPGSPGGAVGRAV
RAVRRGGSHRGPKLGRTFQEKVSGGGDLEEQKEGGCMMLGTLPRASPGAVVRAWLSNISE
EPVKYEMVDEGEDLAGRSPEGPEEDPVDQYPPDGLEGSVQARQVPLEGAASEKAEPDAAL
PGTGSAGPRSGEGLPCSGVSEAPTEAGKGKGAAVDRAMGQCVLPSRVSSSIHIMKALMGS
RPGRPSSVPEVSSSEGRRLGRSAQALVTCLARLRFFDDDLGSPAGKVRFTDSPRYQELLS
TLQALWPGSGLGHRELDSGLQELGWGQALPALGSHTAAEDFTPTSSSGVDVGSGSGGSGE
GHGPCTVDCALVPERMGLPSSIPCQRPDSRISGNPEDPGNQQTSGSEAGGASSEDRAERN
SGEQMLGSDLDQGVKNTMQEEGVQLEEIKEEKERAELQEEGVKGFPKEEGITGRESSGAG
SQDAAGAREDKSLQEEQGDPTSATLSPPGKRESPKERSKSLRESDPDASGSRGGPNAEPS
LEKLSTAAETGCGQTQAKLTQGAEERGTSTARRGPLDPDPLWVSKLLKNMEKAFMAHLAT
ATAELQARWGLESNDLLDQMVAELQQDVGRRLQDHIEKELRKVQSRAGGTAPGPPREALR
WETPQQTKQYGQHPQGLSDLSASSEHTQGRGPPSFSLEDVPTFRGALGTRLGEQVEEEGF
CPCEACMRKKVAPASPRDAVRAASAPVREAFDLQQILQKKKGRCADGETAEAAPAKRGME
PLERDPSGTDPVRGADGGPELGSGQGPGVEVGHETLSRDEAPRGAEEGATAEKRERKTDP
FVGSYPDGVGWGKQGVGREEGDPEVGSGAEDTGAGEAPGGSDPSPGGQNAGAESAEAQGA
DGEQQAESGGGNRGKREARPQLGLGHRQSREASRNSSSDQEGRPTPSPAPGADSPRQRSG
LSSSSASSLGNCSRLSQKSSEDEPSDRPTRSLEDEAKGVPDPETKVTGTCPESSPSEQDG
APSGSRMPERGTDEGLTPELGEEGGPAPEQGTERGSDLEAEKVVKSLTSTEVIFKTLPMD
RTDGFGQDDFDF
NT seq
5799 nt
NT seq
+upstream
nt +downstream
nt
atgaacagcaccccgagggatgcccaggcccccggacaccgcgagtgcctcctgccttct
gtggcccggaccccctctgtcacccaggtcatgccagccaagaagataactttcctcaag
cgaggggatccccagtttgctggggttcgcctggccgttcaccgacgcgccttcaggagt
ttcggggccctgatggatgagctctcgcagcgcgtgccgctctcctttggggtgcgctcc
gtcaccacgccccggggcctgcacggcctcagcaccctggagcagctgcaagacggcggc
tgctacctctgctccgataagaagccccccaagacccccagcgggccgggccggccacgg
gggagaagcccttctcagcagtcacgggatttcgaaggctgctgcgaggcacctggaacg
gcttcttcctgcaaaagtctcagagccccgaggaggataacgctggttaagaacggcgac
cctcgataccagcagacagcggtgctcagtcacaggaacctgacggcctttctcagcaaa
gcctcggatctgctgcactttcccgtgaagcaggtgtacacaaccggtgggaaaaaggtg
gactctctgaagggtctgctacacagcccctcagtgctggtatgtgccggtcacgagccc
ttcagacctctggcagtggaagatgtcagaagaaatggaagtgaacctttatctgggcag
acttcaaggaggaaaagcgggagctgggggcccaaagccaagcagagcgtgatccacgcg
cggtccaggccaggcagcaggccacggcgctgctccttgctgtcagagaggtctgggctc
ggtgacccctcggtgcctctgcaaagtgcctgcacgtgccctgctcctgacgggaaccct
cagggcacacctggccagctcagcccgtcggtagccggtgaagacattgagaagaacgtg
cgtgtgaacgaggacggcagcttgtccgtggagatgaaagtccgcttccacctacagggg
gaggacctgctcctgtggtccaggagggttgggagggccagcagtctcacagcggccagt
ggggtgggccccgtcctggggcaggcagatcccctcggctgtgtgtggaggggaccccct
agggacccctcggagcctggggcacagggactggggccctgcgaggcaggaggtgtggga
gcctttgaccgaggccggtggcagccggggtctagatatgagatctggatgaaccccctt
tatgccccccagggagagcagacagcctctcagaggaggtctgggctgccccagaggtcc
cactccaggacccccaggagccaaggggtcgccagcaggaaaagaaggagcaaagacagc
gccagcccttcctccagtgacagagcccctgaaggctctgagaacaactcttctttctgc
tccaggtccctggaggatggtgtgggcagctgtggcccacgtctggcctcaggggctggt
gagagcacaggcgagggagcaatgccgggcctcagagagcaccgtggctgcctgaaaccc
gggacccgaggcccggcagacgcttttcctgactccttggcaagtggcgggtcccacgag
gcgtccagtgaaacaggtgaactgcaccagggccgccccagcaagaagagctgggccgcg
ccttcctggggggccacccaggggggaggccccggctcccccgctgtgggcccctcgtct
gtaaggacagagggcccccgggcagcctctggggaggacgcaggaggccaccgtccacct
tctgcctgtgcctcagccccaggcaggagcagaaagcagcagagcagagccggcaccctg
tccttacccagcgtttctgtcctcagccgagggtcccagagggaccgccccgggcaacac
caccacccaaaggacacccactgcccactcggcttgcctgtgtccaggccagtgccgggg
cctcccagcagaggcagggcccgcccagacagcccagcgcctggcccttcggaaagccca
cacagccgcgggagccgggcctcccgggacccggggccctgcttctccgccactctttat
tcccgggacacgcgagggtccagcagcattcccaccacccctgtgagcaattctgactgt
gcttccgatttccaccccccaaattcccccgctgctgagaccgaaggggaccctgagttc
agggcgtgttcaccagctcccacaccttcagacacatctggctctttcaactcgcaagct
gatggcctgggtgaaaaggcagggggtgacagtcccaagccttcctggcccttggtcctg
ccagtcgggtggcccgagggagggaggccgggagtgcacggggccagctgctgctcgcag
ctgggcgcatccccggccctcggttcccccggtgggaagacgcagtcgctgccagcctcc
cagtcttggggcggccagggccccttctctgaggcctgctcggtgtgcagcaggtactgt
cccatgcctcgcaagccacggccctcgggcaagaaacatcctttgcgtaccctcagccac
agcgagggcacccacagtgctgatggggagccgggcggggccgaggcgggggaggaaaag
ctggacgtgtggcgccctcggccccctggctctccgggaggggccgtggggagagcagtc
agagccgtgagaaggggtggctcccaccgcggtcccaagctcgggagaacgttccaggag
aaggtctcgggcggaggagacctggaggagcaaaaggaaggtggctgcatgatgctgggc
accctgccccgagcctccccaggagcggtggtccgtgcatggctgagcaacatctcggag
gagcccgtgaaatacgagatggtggacgagggcgaagacctggctgggcgcagcccggaa
ggtcccgaggaggaccctgttgaccaatatcccccagatggcctggaagggtcagtgcag
gccagacaagtgcccctggaaggggcggccagtgagaaagcagaaccagatgcagccctc
ccagggacgggcagcgctggtcccaggtcaggagagggcctgccttgcagtggggtttca
gaagcccctacggaggccggcaaaggcaaaggagcggctgtggaccgtgcgatgggccag
tgcgtgcttcccagcagggtctcttcctccatacacatcatgaaggcgctgatgggatcc
aggccaggccggcccagcagtgtgcccgaagtgtccagctcagagggcaggagactcggc
cgctcggcccaggccctcgtcacctgtctcgccaggctccgcttctttgatgatgacctt
gggtctcccgctggcaaagtgaggttcacagactctcctcggtaccaggagctcctgagc
accttgcaggccctgtggccagggagtggccttgggcacagagagctggactcgggcctc
caggagctaggctggggccaggccctgccggcccttgggtcccacactgcagctgaggac
ttcacgccaacgtcctcctctggtgtggatgttggcagtggttccggaggctcgggggag
ggacacgggccctgcaccgtggactgcgccctggtccctgagaggatggggctgccctca
agcatcccctgccagaggcctgattccagaatctcagggaacccagaggatccgggaaac
caacagacgagtggttccgaggctggtggtgcctccagcgaggacagggccgaaagaaac
agtggggagcagatgttgggcagtgacctggaccaaggtgttaaaaacacgatgcaagaa
gagggggtacaattagaggaaataaaagaggaaaaagaaagagcagaactgcaagaagag
ggtgttaaagggtttcccaaagaggaaggaatcacaggacgagaatcgtcaggggcgggc
tctcaggatgcggcgggtgccagggaagacaagagcctgcaggaagagcagggagacccc
acctcggccacactgagccccccagggaagagagagagcccgaaagagcgctctaagagc
ctcagggagagtgacccagacgccagcgggagtcgaggtggccccaacgctgagccttct
ttggagaagttgtccacagcagctgagacaggctgtgggcaaacccaggccaagcttacc
cagggggcggaggagaggggcacttccacagcccgcagagggcctctggaccctgacccc
ctctgggtgtccaagttgctgaagaacatggagaaggccttcatggcccacctcgccact
gccacggccgagctccaagcccgctggggcctggagagcaacgacctgctggaccagatg
gtggccgagctgcagcaggacgtgggccggcggctccaggaccacatcgagaaggagctc
cgcaaggtgcagagccgggcggggggtacggcgccggggccacccagggaagccctccgc
tgggagacgccccagcagaccaagcagtacgggcagcacccccagggcctgagtgacctc
tcagcttcctccgagcacacgcagggccgggggcccccctccttctccctggaggacgtg
ccaaccttcagaggagccctggggacccggctcggggagcaggttgaggaggaggggttc
tgtccctgcgaggcctgcatgaggaagaaagtggcccctgcatccccgagggacgcagtg
cgggcggccagtgcgcccgtcagagaggcctttgacctgcagcaaattctgcagaagaag
aaaggaagatgtgcggacggggagacagcagaggcggcccctgcaaagagggggatggag
cccctcgagagggacccctcggggacggaccctgtccggggagcagacggaggccctgag
ctgggatcaggccagggccccggggtggaggtggggcacgagaccctcagcagagatgaa
gccccccggggggcagaggagggggcaactgctgagaagagagaaaggaaaacagacccc
tttgtaggcagctacccggacggggtggggtgggggaagcagggtgtgggcagggaagaa
ggagacccagaggtgggctctggggctgaggacactggggcgggtgaagccccgggagga
agtgacccaagtccgggaggacagaacgctggtgctgaaagtgcagaggcccagggagct
gacggggagcaacaggcagagtcaggaggaggaaatcgaggtaagagagaagcgcgccct
cagcttggcctcggacaccgccagtcgcgtgaggcttctagaaacagcagctcagaccag
gagggcaggcccacgccgtccccagccccaggtgcagactccccccgccaaaggtcaggc
ctctcgtcctccagcgcatcatctctggggaactgctctcggctctctcagaaaagctcc
gaagatgagccttcagacagacccacgaggagccttgaagatgaggccaagggcgtccct
gatccagagacaaaagtcacaggcacgtgtccagaaagctccccttctgagcaagacggg
gccccctcaggctcgaggatgccagagcgaggaacagatgaaggtttgactccagagctg
ggggaagagggaggcccggctccagagcaggggacagagagaggctctgacttagaagct
gagaaggtagtgaaaagtctcacttccacagaagtgatatttaaaaccctccccatggac
aggacagatggctttggccaagacgactttgatttctaa
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