Phocoena phocoena (harbor porpoise): 136124596
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Entry
136124596 CDS
T11058
Symbol
VLDLR
Name
(RefSeq) very low-density lipoprotein receptor isoform X1
KO
K20053
very low-density lipoprotein receptor
Organism
pphc Phocoena phocoena (harbor porpoise)
Pathway
pphc05017
Spinocerebellar ataxia
pphc05417
Lipid and atherosclerosis
Brite
KEGG Orthology (KO) [BR:
pphc00001
]
09160 Human Diseases
09164 Neurodegenerative disease
05017 Spinocerebellar ataxia
136124596 (VLDLR)
09166 Cardiovascular disease
05417 Lipid and atherosclerosis
136124596 (VLDLR)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pphc04131
]
136124596 (VLDLR)
Membrane trafficking [BR:
pphc04131
]
Endocytosis
Clathrin-mediated endocytosis
Low-density lipoprotein receptor (LDLR) family proteins
136124596 (VLDLR)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ldl_recept_a
Ldl_recept_b
FXa_inhibition
cEGF
EGF_CA
SGL
EGF
EGF_LRP2
Mucin
hEGF
DUF4010
LDLRAD1_C
Motif
Other DBs
NCBI-GeneID:
136124596
NCBI-ProteinID:
XP_065735433
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Position
6:complement(62300717..62332758)
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AA seq
873 aa
AA seq
DB search
MGTSARWALWLLLALCWAPRESGTTGAGRKAKCEPSQFQCTNGRCITLLWKCDGDEDCAD
GSDEKNCVKKTCTESDFVCNNGQCVPNRWQCDGDPDCEDGSDESPEQCHMRTCRISEISC
GARSTQCIPVSWRCDGENDCDSGEDEENCGNVTCSPDEFTCSSGRCISRNFVCNGQDDCS
DGSDELDCTPPTCGAHEFQCSTSSCIPISWVCDDDADCSDQSDESLEQCGRQPVIHTKCP
ASEIQCGSGECIHKKWRCDGDPDCKDGSDEVNCPSRTCQPDQFECEDGSCIHRSRQCNGI
RDCVDGSDEVNCKNVNQCLGPGKFKCRSGECIDISKVCNQEQDCRDWSDEPLKECHVNEC
LVNNGGCSHICKDLVIGYECDCAAGFELIDRKTCGDIDECQNPGICSQICINLKGGYKCE
CSRGYQMDLATGVCKAVGKEPSLIFTNRRDIRKIGLERKEYIQLVEQLRNTVALDADIAA
QKLFWADLSQKAIFSASVDDKVGRHVKMIDNVYNPAAIAVDWVYKTIYWTDAASKTISVA
TLDGTKRKFLFNSDLREPASIAVDPLSGFVYWSDWGEPAKIEKAGMNGFDRRALVTADIQ
WPNGITLDLIKGRLYWLDSKLHMLSSVDLNGQDRRVVLKSLEFLAHPLALTIFEDRVYWI
DGENEAVYGANKFTGSELATLVNNLNDAQDIIVYHALVQPSGKNWCKEDMENGGCEYLCL
PAPQINDHSPKYTCSCPNGYSLEDNGRECQSTATTVTYSETKDTNTTEMSPTSGLAPGEI
NVTTAVSEVSVPPKGTSAAWAILPLLLLAMAAVGGYLMWRNWQHKNMKSMNFDNPVYLKT
TEEDLSIDIGRHSASVGHTYPAISVVSTDDDLA
NT seq
2622 nt
NT seq
+upstream
nt +downstream
nt
atgggcacgtccgcgcgctgggcgctctggctgctgctcgcgctgtgctgggcgccccgg
gagagcggcaccaccggagcgggaagaaaagccaaatgtgaaccctcccaattccagtgc
acaaatggccgctgtattaccctgctgtggaaatgcgatggggacgaagactgtgctgat
ggcagtgacgaaaagaactgtgtgaagaagacgtgcaccgagtctgactttgtgtgcaac
aatggtcagtgtgttcccaaccgatggcagtgtgatggggatcccgactgcgaagatggt
tctgatgaaagcccagagcagtgccatatgagaacatgccgcataagtgaaatcagctgt
ggtgcccgttccactcagtgtatcccagtgtcctggagatgtgatggtgaaaatgattgt
gacagtggagaagatgaagaaaactgtggcaatgtaacgtgcagccctgatgagttcact
tgctccagtggccgctgcatctccaggaatttcgtgtgcaacggccaggatgactgtagc
gacggcagcgacgagcttgactgcaccccacccacctgcggggcccacgagttccagtgc
agcacctcctcctgcatccccatcagctgggtgtgcgatgacgacgcagactgctcggac
cagtcggatgagtccctcgagcagtgcggccgccagccagtgatccacaccaagtgccca
gccagcgagatccagtgcggctctggcgagtgcatccacaagaagtggcgatgtgacggg
gatcctgattgcaaggatggcagcgatgaggtcaactgtccttcccgaacctgccagcct
gaccagtttgagtgcgaggatggtagctgcatccacagaagcaggcagtgcaacggcatc
cgagactgtgtggacggttctgatgaagtcaactgcaaaaatgtcaatcagtgcttgggc
cccgggaaattcaagtgcagaagcggggaatgcatagatatcagtaaagtgtgtaaccag
gagcaggactgcagggactggagtgatgagcccctgaaagaatgtcatgtcaatgaatgc
ttggttaataatggcggatgctcccatatctgcaaagacctagttataggctacgaatgt
gactgtgcagccgggtttgaactgatagataggaaaacctgtggagatattgacgaatgc
caaaatccggggatctgcagtcaaatttgtatcaacttaaaaggcggctacaagtgtgaa
tgtagtcgtggctatcaaatggatcttgccactggcgtgtgcaaggcagtaggcaaagag
ccaagtctgatcttcactaatagacgagacatcaggaagattggcttggagaggaaagaa
tatatccaactagttgaacagctgagaaacactgtggctctcgatgctgacattgctgct
cagaaactattctgggctgatctaagccaaaaggccatcttcagtgcctcagttgatgac
aaggttggtagacatgttaaaatgatcgacaatgtctataatcctgcagccattgctgtt
gattgggtgtacaagaccatctactggactgatgcggcttctaagactatttcagtagct
accctagatggaaccaagaggaagttcctgtttaactctgacttgcgagagcctgcctcc
atagctgtggacccgttgtctggctttgtttactggtcagactggggtgaaccagctaaa
atcgaaaaagccggaatgaatggatttgacagacgggcgctggtgacagcggacattcag
tggcctaacggaattacacttgacctcataaagggccgcctctattggctggattccaaa
ttgcacatgttatccagtgtggacctgaacggccaagatcgcagggtggtcctaaagtct
ctggaattcctagctcatcccctcgcgctcacaatatttgaggatcgtgtctactggata
gatggggaaaatgaagccgtctacggcgccaataaattcactggatcggagctggccact
ctagttaacaaccttaacgatgcccaagacatcatcgtctatcatgcacttgtacagcca
tcaggtaaaaactggtgcaaagaagacatggagaatggaggatgtgaatacctctgcctg
ccagccccacagattaatgaccactctccaaaatatacctgttcctgtcccaatggctac
agtctagaggacaatggccgagaatgccaaagtactgcaactactgtgacttacagtgag
acaaaagataccaacacgacagaaatgtcaccaactagtggactagctcctggagagatc
aatgtgaccacagcagtatcggaggtcagtgttcccccaaaagggacttctgctgcctgg
gccatccttcccctcctgctcttagcaatggcagcagtaggtggctacttgatgtggcgg
aactggcaacacaagaacatgaaaagcatgaactttgacaatcctgtgtacttgaagacc
actgaagaggacctgtcaatagacattggtagacacagtgcttctgtcggacacacgtac
ccagcaatatccgttgtaagcacagacgatgatctagcttga
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