Phocoena phocoena (harbor porpoise): 136125343
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Entry
136125343 CDS
T11058
Symbol
ATG4B
Name
(RefSeq) cysteine protease ATG4B isoform X1
KO
K08342
cysteine protease ATG4 [EC:3.4.22.-]
Organism
pphc Phocoena phocoena (harbor porpoise)
Pathway
pphc04136
Autophagy - other
pphc04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
pphc00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
136125343 (ATG4B)
04136 Autophagy - other
136125343 (ATG4B)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
pphc01002
]
136125343 (ATG4B)
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pphc04131
]
136125343 (ATG4B)
03029 Mitochondrial biogenesis [BR:
pphc03029
]
136125343 (ATG4B)
Peptidases and inhibitors [BR:
pphc01002
]
Cysteine peptidases
Family C54: Aut2 peptidase family
136125343 (ATG4B)
Membrane trafficking [BR:
pphc04131
]
Autophagy
Autophagosome formation proteins
Atg8 conjugation proteins
136125343 (ATG4B)
Mitochondrial biogenesis [BR:
pphc03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
136125343 (ATG4B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_C54
ATG4_LIR
Motif
Other DBs
NCBI-GeneID:
136125343
NCBI-ProteinID:
XP_065736195
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All DBs
Position
7:115166100..115186155
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AA seq
393 aa
AA seq
DB search
MDAATLTYDTLRFAEFEDFPETSEPLWILGRKYSIFTEKDEILADVASRLWFTYRKNFPA
IGGTGPTSDTGWGCMLRCGQMIFAQALVCRHLGRDWRWTRRTRQPDSYFSVLHAFLDRKD
SCYSIHQIAQMGVGEGKSIGQWYGPNTVAQVLKKLAVFDTWSALAVHVAMDNTVVMEDIR
RLCGSSLPCAGAAALPAGSEPRCNGLPAGPEIASRPSPWRPLVLLVPLRLGLTDINAAYA
ETLKHCFMMPQSLGVIGGKPNSARYFIGYVGEELIYLDPHTTQPALQAAEHCPIPDESFH
CQHPPSRMSIAELDPSIAVGFFCGTEDDFNDWCQQVKKLSLLGGALPMFELVERQPSHLA
CPDVLNLSLDSSDVERLERFFDSEDEDFEILSL
NT seq
1182 nt
NT seq
+upstream
nt +downstream
nt
atggacgcagctactctgacctacgacactctccgatttgctgagtttgaagatttcccc
gaaacctcggagcctctttggatcctgggtagaaagtacagcatcttcacagaaaaggac
gagatcttggccgatgtggcgtcgagactttggtttacatacaggaagaacttcccggcc
attgggggcaccggccccacctcggacacgggctggggctgcatgctgcggtgtggacag
atgatctttgcccaagccctggtgtgccggcacctgggccgagactggaggtggacacgg
cggacgaggcagccagacagctacttcagcgtcctgcacgcgttcctggacaggaaggac
agctgctactccatccaccagatagcacaaatgggagtcggcgagggcaagtccatcggc
cagtggtacgggcccaacaccgtcgcccaggtcctcaagaagctcgccgtcttcgacacg
tggagcgccctggccgttcacgtagcgatggacaacacggtggtgatggaggacatcaga
aggttgtgcgggagcagcctgccttgtgccggggccgcagcgcttcctgcaggttccgag
ccacgctgtaacgggctcccggccgggcctgagatcgccagcaggccgtcgccatggaga
ccgctggtgctgctggtcccgctgcgcctggggctcacggacatcaatgcggcctacgcg
gagaccctgaagcactgcttcatgatgccccagtccctgggcgtgatcggagggaagccc
aacagtgcccgctacttcatcggctacgtgggtgaggaactcatctacctggaccctcac
accacacagccagccctgcaggccgctgagcactgcccgatcccggacgagagcttccac
tgccagcacccgcccagcaggatgagcatcgcagagctcgacccgtccatcgccgtgggg
tttttctgtgggaccgaggatgactttaacgactggtgccagcaagtgaaaaagctgtcc
ctccttggaggcgcgctgccaatgtttgagctggtggagcggcagccttcccacttggcc
tgtcctgacgtcctgaacttgtccttagattcttctgacgtagagcgactggaaagattc
tttgactcagaagatgaagactttgaaatcttgtccctttga
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