Phocoena phocoena (harbor porpoise): 136125478
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Entry
136125478 CDS
T11058
Symbol
RIF1
Name
(RefSeq) telomere-associated protein RIF1 isoform X1
KO
K11138
telomere-associated protein RIF1
Organism
pphc Phocoena phocoena (harbor porpoise)
Pathway
pphc04550
Signaling pathways regulating pluripotency of stem cells
Brite
KEGG Orthology (KO) [BR:
pphc00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04550 Signaling pathways regulating pluripotency of stem cells
136125478 (RIF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pphc03032
]
136125478 (RIF1)
DNA replication proteins [BR:
pphc03032
]
Eukaryotic type
DNA Replication Termination Factors
Other termination factors
136125478 (RIF1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rif1_N
XMAP215_CLASP_TOG
Motif
Other DBs
NCBI-GeneID:
136125478
NCBI-ProteinID:
XP_065736292
LinkDB
All DBs
Position
7:36230636..36280874
Genome browser
AA seq
2467 aa
AA seq
DB search
MTAPGHSPFVPLLETLEDPSASLGEQTDAYLTLTSRMTGEDGKEIIIEIEKKLPQLFRVL
KTHIASQNSELSSAALQALGFCLYNPKITSGLSETNIQELLSKLNDIVKNSDKNVRTRAL
WVISKQTFPTEVVGKVVSSIIDSLEIVFNRGEMHSAVVDYEALNVIIRLIEQAPIQMGEE
SIRWAKLVIPLVVHSAQKVHLRGATALEMGMPLLLQKQQEIASITEQLMTTKLLSELQKL
FMSKNETYVLKLWPLFVKLLGKTLHRSGSFINSLLQLEELGFRSGAPMIKKIAFIAWKSL
IDNFALNPEILCSAKRLKLLMQPLSSIHVRTETLALTKLEVWWYLLMRLGPHLPANFEQV
CVPLIQSTISIDSNASPQGSSSRVATSPALNPATPVHKGASPYGTPRMNLSSNFGGMATI
PSIQVLGLEMLLHFLLGPEVLSFAKQNKLMLSLERLEHPLISSSSFFSKHANTFITAVRD
SFVAIRKDASDAIVNAIWKELVSLVKSVIESGNKKERPGSEVLTLLLKSLESIVKSEVFP
VLKTLVLMEITIKGLPQKVLGSPAYQVANMDILNGTPALFLIQLIFNNLLACGVEDERFF
LNLETLVGCVLSGPTSPLAFSDSVLNVINQNAKQLKNKEHLWRMWSIIVTPLTELINQTN
EVNQGDALEHNFSAIYCALTLPINHIFSAQKIPAATMKTLLKTWSELYRAFARCAALVAT
AEENLCCEELSSKIMSSLEDEGLSNLLFLDRITHIITVMVDCIDFSPYNIKYQPKIKSPQ
RPSDWSKKKKEPLGKLASLFKLIVRVICSFHTLSLKEVHSDTLLAIGNSITSILSNVLGH
ISLPSMIRKIFATLTRPLALFYENSKFDEVPKVYSCMNNKLEKLLGEIIACLHVSYTGTY
DSELLEQITPLLCIVFSHKNKQIRKQSAQFWNATFAKVTMLIYPEELKPILKQAKQKSLL
LLPGLENVEIIEESSGPYSDTTENSQLNMKISGMERTSSGKRDSFLAQTKDTKDNMKPPA
KLKLESSTPKAKSEMPLEEEKSTDFVFIPPEGKETKERILTEHQKEVLKTKRCDIPAMYN
NLDVSQDTLFSQYGQEESMEIPTLTEKSKEDSKMIFKEEQKESDIVIPQHVMENCGMDEH
LEKASLSNNECGSIEETNPEILSSNDARKKALIVSKKTPTECASSTENTFGVSSSSVSNA
TISGTPPPQPTSRRQSFITLEKFDGSENRPFSPSPLNNMSSAVIVKNNQEGTAKTDNPPK
AKKREVALSKSDSAKTVHGIKRSVRRSSKPEPIGNKKSKPLMRSDQEKSTRESVDGMVAL
ENNPPGLLNQTECALDNQVHLSESSVEYEDTMLKPTIENTVLLENSTVEEKTLEINLESK
ENTPPAIITTDQTVNEDSHVQITPNHKTLRRSLRRRSETAEPTTDSQDKENNQKRERRKE
EEKTLQRSPLHVKDDVLPKQKLISEQTVQENLIEKGNNLHEKTFGETSANAEIDENRRKP
DLETTKSEGDGAQDIADKSSEITVRGRTRYQTRRASQGLLSSIENSESDSSEAKEEGSKK
KRSGKWKNKSNDSVDIEDQEEKMVKQECIKVESQTHDYKGNSEVDKDTKSQICEKREESN
TVTLQDSTISSELLQVSGDVSNTYEGKSKTNKCAEHSFSNPSVPESNLRTRNANKRLHKR
DSLENSVGESSKTETSDISLLSEKTLQTLECQHKRSKRVRRSKGCDCCGEKSQPQEKSFI
GLKNTENYDVKVSETKKTDVQTPVTISETSKADLYSEVKLLDEHHSVNFHLDLKEENDTI
NDSLIISETELKENTIKDFLPSEMVNFKEETCDRDSEVAISLESQEPSNKKCKTIDPCLG
DFKDISLECLTLETKEEKPEAIPKKELSIIENLVNVEADAELNPGEVDAMELNAENDKSE
ASFSKQKSVKTDISEEEVTEKNSQSTDAPEELSADEAIAVEFNSGIGHSDNTAPVKVSAQ
LEISEQIAVGELDRGSDESDPGSSGEMNAEMENCEETVIGEVTTETDRVNETEDEDLTTK
ASKPIEAETKRLNAEIDSFVPNTLEMSSEEGKVDSNKTETNIEPNKFEETKLGDSQMVAG
NDGILPEVHHISEKVEETPQSLTAETAVSELVSEDNNTSPQKLKDVDPLLMSANDSPSGM
QTRCVWSPLASPSTSILKRGLKRPQEDESSSPVHKVRRVSFADPIYQAGLADDIDRRCSI
VRCHSSNSSPVVKSVKTSPTAQSKHNTTSAKGFLSPGSRSAKFKSSKKCLIAEMSKESVP
CPTESVYPALVNCVAPVDIILPQITSNMWARGLGQLIRAKNIKTIGDLSTLTASEIKTLP
IRSPKVSNVKKALRVYHEQQVKSRGLEEIPVFDISEKTVNVMENKSISPDEERLASDLID
PVALETPLSKNLVAQISALALQLDSEDLHNYSGSQLFEMHEKLGSMANSIIKNLQSRWRS
PAHENSI
NT seq
7404 nt
NT seq
+upstream
nt +downstream
nt
atgacggccccgggccacagccctttcgtgccgctgttggagactttggaagacccttcc
gcctcccttggagagcagaccgacgcttacctgactctgaccagtcgtatgactggagaa
gatggaaaagaaatcattatagaaattgagaagaaacttcctcagctattcagagtttta
aagactcacattgccagtcaaaactcagagctcagtagtgctgctctgcaggccttgggg
ttttgcttatataatccgaaaattacttctggattatcagagacaaatattcaagaactg
ctttcaaaactgaatgatattgttaagaattcagataaaaatgtacgtactagggcactt
tgggtgatatccaaacagacgtttcccactgaagttgttggcaaagtagtatctagtata
attgattcattagaaatagtctttaatagaggagagatgcattctgctgttgtggattat
gaagcattaaatgtcatcataaggctaattgaacaagccccaattcaaatgggagaagag
tcaattagatgggcaaaattggtcataccattagtggttcattcggcccaaaaggtacat
ttgcggggagctactgctctagagatgggaatgccgttgttacttcagaaacaacaagaa
atagcatctatcacagagcagcttatgactaccaaattactttcagaactccagaagcta
tttatgagtaaaaatgagacttacgtgttaaaattatggcctttgtttgtcaaacttctt
gggaagaccttgcatcgaagtgggagtttcatcaattctctattacagctagaagaactg
ggatttcgtagtggagcacccatgattaaaaaaatagcttttattgcttggaagagttta
atagataattttgctttaaatccagaaatactatgtagtgcaaaaagactgaagttgtta
atgcagcctttgagttctatccatgtgagaacagaaactctagcgctgacaaaactagaa
gtctggtggtatttattgatgagactaggacctcatcttcctgctaattttgaacaggtc
tgtgtgcctctgattcaaagcacaataagcattgattctaatgcttcacctcaaggcagt
tcatctcgtgtagctacttctccagctttaaatcctgcgacccctgtacacaaaggtgct
tctccatatggaactccccggatgaacttgagttcaaattttggtggaatggccacaatc
ccctctatacaagttttggggcttgaaatgttgcttcattttttgttgggtccagaagtc
ttgagttttgctaagcaaaacaaacttatgctgagcttagagcgacttgaacatccgtta
atcagcagctcttcttttttttccaaacatgcaaatacatttatcactgctgttcgtgat
agctttgttgcaattagaaaagatgcttctgatgcaattgtcaatgctatttggaaggag
ctagttagcttggtgaagtcagttattgaatctggtaacaaaaaagagagaccaggttct
gaagttttgactcttctattaaaatctttggaaagcatagtgaagtcagaagtatttcct
gtattgaaaacactggttctcatggaaattacaattaaaggacttcctcagaaagtatta
ggttctccagcatatcaggttgctaatatggatattcttaatgggactcctgctttgttc
ttaattcagttaattttcaataatctgttagcatgtggtgtagaagatgaaaggtttttt
ctcaacctggaaacacttgtaggctgtgttctttctggtccaacttcaccgctggctttc
agtgactctgtcttaaatgttattaatcaaaatgcaaagcagttgaaaaacaaggagcat
ctttggagaatgtggagtattatagtcaccccattaactgaattgataaatcagaccaat
gaagtgaatcaaggtgatgccttagaacataattttagtgccatctattgtgcactgact
ttaccaataaaccatattttttcagcacaaaaaattccagcggccaccatgaagacctta
cttaaaacttggtcagaattatatagagcatttgctcgctgtgcagctttggtggcaact
gcagaggagaatttgtgctgtgaggaactttcttccaagataatgtccagtttggaagat
gaaggcctttcaaatttattgttcttggataggatcactcatattattactgtaatggtt
gattgcatcgacttttcaccatataatattaagtatcagcccaaaattaaatcaccacag
agaccttcagattggtccaaaaagaagaaggagcccttgggaaaattggcttctttattt
aaacttattgtgagagtgatctgttctttccacactctgagcctcaaggaagtacattct
gatactctcctcgctattggcaactcaatcaccagcattctttccaatgtacttggacat
atttctttgccttctatgatccgaaaaatatttgcaactttaacaagacctctggcatta
ttttacgaaaactcaaagtttgatgaagttcctaaagtatatagttgtatgaacaacaag
ttagaaaagctactaggagaaattattgcttgtctacacgtcagctacactgggacttat
gacagtgaacttcttgaacagatcacgccattattatgcatagtattttcacacaagaat
aaacagattagaaaacaaagtgctcagttctggaatgccacatttgctaaagtgacgatg
ttgatttatcctgaggagttaaaaccaatactgaaacaagccaaacaaaaatctctgctt
ctgttgcctggtttggaaaatgttgaaattattgaggaatccagtggaccatattcagat
acaacagaaaattcacagttaaatatgaagataagtggcatggaaagaacctcaagtgga
aaaagagattcttttttggcacaaacaaaggatacaaaagacaatatgaaaccaccagct
aaattgaaactagagtcttcaactccaaaagcaaagagtgaaatgcctttggaagaagaa
aagtctactgactttgtgtttatacctccagaaggaaaagaaacaaaggaaaggatacta
actgaacaccagaaggaagtactcaaaacaaagaggtgtgatattcctgccatgtataat
aatctggatgtttcacaagatactttattttctcagtatggtcaggaagagtctatggaa
attcctactttaactgaaaaatccaaggaagattccaagatgatatttaaggaggaacaa
aaggagagtgacattgtcattcctcaacatgtcatggaaaactgtggtatggatgaacac
cttgaaaaggcttccctttcgaataatgagtgtggttctattgaggaaaccaatccagaa
atactgagcagtaatgatgccagaaaaaaggctttaattgtatcaaagaagacgccaact
gaatgtgcatctagtacagaaaatacatttggtgtcagcagtagctcggtttctaatgcc
actatttctggaactcctcccccacagcctacaagtcgaaggcaatcctttattactttg
gagaagtttgatggctcagaaaatagaccctttagtccatcccctttgaataatatgtca
tcagctgttatagtgaaaaataatcaggaaggcacggctaaaacagataatccaccaaaa
gcaaagaaaagagaagtggctctttcaaaatctgactctgcaaaaacagtgcatgggatt
aagagatcagtccgaaggtcgagtaagcctgaaccaatagggaataaaaagtctaagccc
ttgatgagatctgatcaggagaaaagtactcgggaatctgttgatggcatggtagcctta
gaaaataacccacctggtttgcttaatcaaacagaatgtgcattagataatcaggttcat
ctctctgagtcttcagtggagtatgaggatacgatgcttaaaccaacaatagaaaatact
gtactattagaaaacagtactgtagaggagaaaaccttagaaattaatttggaatccaaa
gaaaacacacccccagccataataacaacagatcaaacagtaaatgaggatagtcatgtt
cagataactccaaatcataaaacccttagacgatctttaaggcgacgttcagaaacagca
gagccaaccactgatagccaagataaagaaaataatcaaaaaagggaaagacgtaaggaa
gaagaaaagactctgcagaggagtccattgcatgtaaaagatgatgttttacctaagcaa
aaactgatttctgaacaaactgtacaggaaaatttaattgagaaaggaaataatttacat
gagaagacttttggggaaaccagcgctaatgctgaaatcgatgaaaatagaagaaagcca
gatcttgagactactaaatctgagggagatggtgcccaggacattgcagataaatcctct
gagataacagtaaggggacgaacacggtatcaaacaagaagagcatcccagggtttactt
tccagcattgaaaactcagaatctgatagttctgaggcaaaagaagaaggttctaaaaag
aaaagatctggaaaatggaaaaacaaaagcaatgacagtgttgacattgaagatcaagaa
gagaaaatggtaaaacaggaatgtataaaggttgaaagtcagacacatgattataaaggg
aattctgaagtagacaaagatacaaaatctcagatctgtgaaaaaagagaagaaagtaat
actgtaactcttcaagattctacaatatcttcagaattattacaagtttctggtgatgta
tcaaatacttatgagggaaaaagtaaaactaacaaatgtgcagaacattccttttcaaat
ccttctgtaccagaatcaaatctaaggactagaaatgccaataaaagattgcataagcga
gattctctagaaaatagtgtgggtgaatcctcaaaaacagaaacatcagacatttctttg
ctttctgagaaaactcttcaaacacttgaatgccaacacaagagaagtaagagggtgagg
agatctaaaggttgtgattgctgtggagaaaaatcacaacctcaggaaaagtcattcatt
gggttaaagaatacagagaattatgatgtaaaagtcagcgaaacaaaaaagacagatgtg
cagacacctgtaactatatcagaaacttctaaagctgatctgtattcagaagtaaaactt
ttagatgagcatcatagtgtgaattttcatttggatctcaaggaggagaatgatactatt
aatgattcattaattatatctgaaactgagttgaaagaaaatactattaaagactttctt
ccttctgaaatggtaaattttaaagaagaaacttgtgatagggattctgaggtagcaata
tctcttgaaagccaggagccatctaataaaaaatgtaaaactattgacccatgtttgggt
gacttcaaagatatttcactggaatgtttaactttggagaccaaagaagaaaagccagag
gctatccccaaaaaggaattgagtattatagagaaccttgttaatgttgaagcagatgca
gaattaaatccaggagaagtagatgctatggaattgaatgcagaaaatgataaatctgaa
gctagcttctctaaacaaaagagtgtcaaaactgatatttcagaggaagaggtaacagag
aaaaacagtcaaagtacggatgcacctgaagaactcagtgctgatgaagcaatagctgtg
gaatttaattcaggtattggtcattctgataatactgcacctgtaaaagtgagtgctcag
ttagagatttctgaacaaatagcagttggggaactagacagaggaagtgatgaatctgat
ccaggctcatctggagaaatgaatgctgaaatggaaaattgtgaagaaacagtgattggt
gaggtgactactgaaactgaccgtgtcaatgaaacagaggatgaggacttaactaccaaa
gcctctaagcctatagaagctgaaacaaagagattgaatgcagaaatcgatagttttgtt
cccaacacacttgagatgagctctgaagaaggaaaggttgactctaataaaactgaaaca
aatattgaacctaataaatttgaggaaacaaaattaggtgacagtcagatggtagcagga
aatgatggaattttaccggaagttcaccatatttcagagaaagtggaggagacaccacaa
tctctgacagctgaaacagctgtttctgaactggtatcagaagacaataatacatctcct
caaaaattaaaggatgttgatcctttactcatgtcagcaaatgacagtcctagtggcatg
cagacacgctgtgtctggtctcctttggcttctccatccaccagcattttaaagagagga
ctaaaaagaccccaagaagatgaaagctcatcacctgttcacaaggttcgccgtgtctcc
tttgcagatcctatataccaggcaggattggcagatgacattgataggcgatgctctatt
gttaggtgccattcttcaaatagttctcccgtagtaaaaagtgttaaaacttcacctact
gcgcaatctaagcataatactacttcagccaaaggatttctgtccccaggatcacgtagc
gctaaatttaagagctcaaagaagtgtttaattgcagaaatgtctaaggaatctgtgcca
tgcccaacagaaagtgtttaccctgctttggtgaactgtgtagcaccagttgacatcatt
ttacctcagattacgtccaacatgtgggcaagaggactgggacaactcattagagccaag
aatataaaaacaattggtgatttgagtactcttacagcatctgaaataaaaactcttcct
atccgttctccaaaagtgtctaatgtaaaaaaggctctcagagtatatcatgagcagcag
gtgaagtctcgtggactagaagagattccagtttttgatatttctgaaaaaacagtaaat
gtaatggaaaataaatctatttctcctgatgaagaaagacttgcctcagatttaattgat
cctgttgctttagagactccgttatctaaaaaccttgtggcccagattagtgcacttgct
cttcaactagattcagaagatctccataattattcaggaagccagctatttgaaatgcat
gagaaacttggtagcatggcaaactctataattaaaaatctgcagtcacgttggaggtca
ccagcccatgaaaattctatttag
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