KEGG   Phocoena phocoena (harbor porpoise): 136125729
Entry
136125729         CDS       T11058                                 
Symbol
WDR33
Name
(RefSeq) pre-mRNA 3' end processing protein WDR33
  KO
K15542  polyadenylation factor subunit 2
Organism
pphc  Phocoena phocoena (harbor porpoise)
Pathway
pphc03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:pphc00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    136125729 (WDR33)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pphc03019]
    136125729 (WDR33)
Messenger RNA biogenesis [BR:pphc03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     136125729 (WDR33)
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40 Beta-prop_THOC3 Beta-prop_WDR3_1st WD40_CDC20-Fz WD40_Prp19 WD40_WDHD1_1st Beta-prop_EML_2 Beta-prop_WDR3_2nd Beta-prop_EML Beta-prop_CAF1B_HIR1 WD40_Gbeta WDR55 EIF3I Beta-prop_IFT140_1st Beta-prop_WDR36-Utp21_2nd Beta-prop_Aladin Beta-prop_TEP1_2nd Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd Beta-prop_WDR36-Utp21_1st ANAPC4_WD40 Beta-prop_RIG_2nd Beta-prop_WDR19_1st Beta-prop_EIPR1 WDR90_beta-prop_4th Beta-prop_WDR75_1st Beta-prop_Vps41 Beta-prop_IFT122_1st Collagen eIF2A WD40_RFWD3 Beta-prop_SCAP WD40_MABP1-WDR62_1st Beta-prop_WDR35_TULP_N Beta-prop_DCAF4 Beta-prop_HPS5 Beta-prop_WDR11_2nd Beta-prop_WDR41 Ge1_WD40 PEP5_VPS11_N
Other DBs
NCBI-GeneID: 136125729
NCBI-ProteinID: XP_065736741
LinkDB
Position
7:5602206..5663854
AA seq 1335 aa
MATEIGSPPRFFHMPRFQHQAPRQLFYKRPDFAQQQAMQQLTFDGKRMRKAVNRKTIDYN
PSVIKYLENRIWQRDQRDMRAIQPDAGYYNDLVPPIGMLNNPMNAVTTKFVRTSTNKVKC
PVFVVRWTPEGRRLVTGASSGEFTLWNGLTFNFETILQAHDSPVRAMTWSHNDMWMLTAD
HGGYVKYWQSNMNNVKMFQAHKEAIREASFSPTDNKFATCSDDGTVRIWDFLRCHEERIL
RGHGADVKCVDWHPTKGLVVSGSKDSQQPIKFWDPKTGQSLATLHAHKNTVMEVKLNLNG
NWLLTASRDHLCKLFDIRNLKEELQVFRGHKKEATAVAWHPVHEGLFASGGSDGSLLFWH
VGVEKEVGGMEMAHEGMIWSLAWHPLGHILCSGSNDHTSKFWTRNRPGDKMRDRYNLNLL
PGMSEDGVEYDDLEPNSLAVIPGMGIPEQLKLAMEQEQMGKDESNEIEMTIPGLDWGMEE
VMQKDQKKVPQKKVPYAKPIPAQFQQAWMQNKVPIPAPNEVLNDRKEDIKLEEKKKTQAE
IEQEMATLQYTNPQLLEQLKIERLAQKQAEQIQPPPSSGTPLLGPQPFPGQGPMSQIPQG
FQQPHPSQQMPMNMAQMGPPGPQGQFRPPGPQGQMGPQGPPLHQGGGGPQGFMGPQGPQG
PPQGLPRPQDMHGPQGMQRHPGPHGPLGPQGPPGPQGTSGPQGHMGPQGPPGPQGHIGPQ
GPPGPQGHLGPQGPGTQGMQGPPGPRGMQGPPHPHGMQGGPGSQGIQGPVSQGPLMGLNP
RGMQGPPGPRENQGPAPQGMMLGHPPQEMRGPHPPSGLLGHGPQEMRGPQEMRGMQGPPP
QGSMMGPPQELRGPPGSQGQQGPPQGSLGPPPQGGMQGPPGPQGQQNPARGPHPSQGPIP
FQQQKTALLGDGPRAPFNQEGQNAGPPPLIPGLGQQGAQGRIPPLNPGQGPGPNKGDSRG
PPNHHMGPMSERRHEQSSGPEHGPERGPFRGGQDCRGPPDRRGPHPDFPDDFSRPDDFHP
DKRFGHRLREFEGRGGPLPQEEKWRRGGPGPPFPPDHREFSEGDGRGAARGPPGAWEGRR
PGDERFPRDPEDPRFRGRREESFRRGAPPRHEGRAPPRGRDGFPGPEDFGPEENFDASDE
TARGRDLRGRGRGAPRGGRKGLLPTPDEFPRFEGGRKPDSWDGNREPGPGHEHFRDAPRP
DHPPHDGHSPASRERSSSLQGMDMASLPPRKRPWHDGPGTSEHREMEAPGGPSEDRGGKG
RGGPGPSQRVPKSGRSSSLDGDHHDGYHRDEPFGGPPGSGTPSRGGRSGSNWGRGSNMNS
GPPRRGASRGGGRGR
NT seq 4008 nt   +upstreamnt  +downstreamnt
atggctacagaaattggttctcctcctcgttttttccatatgccaaggttccaacaccag
gcacctcgacagctattttataagcgacctgattttgcacagcagcaagcaatgcaacag
cttacctttgatggaaaacgaatgagaaaagcagtaaaccgaaaaaccatagactataat
ccatctgtaattaagtatttggagaatagaatatggcaaagagaccagagagatatgcgg
gcaattcagcctgatgcaggttattataatgatctggttccacctattgggatgttgaat
aatcctatgaatgcagtaacaacaaagtttgttcgaacatcaacaaataaagtaaagtgt
ccagtatttgttgttaggtggactccagaaggaagacggttagtcactggagcctctagt
ggagagttcaccttgtggaatggactcactttcaattttgaaacaatattacaggctcac
gatagcccagtgagagccatgacttggtcacataatgacatgtggatgttgacagcggac
cacggaggatatgtgaaatattggcagtcgaacatgaacaacgtcaagatgttccaggca
cataaggaggcgattagagaggccagtttctcacccacggataataaatttgctacatgc
tctgatgacggcactgttagaatctgggactttcttcgttgccatgaggaaagaattctc
cgagggcacggtgctgatgtgaagtgtgtagactggcatccaacaaaagggttagttgtt
tcaggaagtaaagatagtcaacagccaatcaagttctgggatcccaagactgggcagagt
cttgcaacacttcatgcccataaaaacacagtaatggaagtgaaattaaatctcaatggt
aactggctactcacagcatcacgcgaccacctctgtaaacttttcgacatccgaaacctg
aaagaagagcttcaagtcttccgaggtcataagaaagaagctacagctgtggcctggcat
cctgttcatgaaggactttttgccagtggagggtctgatggctctttgttattctggcat
gttggggtagagaaagaagtgggtgggatggagatggcccatgaaggaatgatttggagt
ctggcttggcatcctcttggacatattctctgctcaggctcaaatgaccatactagcaaa
ttttggacccgaaaccggccaggtgataaaatgcgagatcgatacaatctaaacctgttg
cctggaatgtctgaagatggagtggaatacgatgaccttgaacctaatagcctggcagta
attccagggatgggaataccagaacaactaaaattagctatggaacaagaacagatgggg
aaagatgaatcaaacgaaattgaaatgacaattccaggtttagattggggaatggaggag
gtgatgcaaaaggatcagaaaaaagtacctcagaagaaagttccttatgcaaaacctatt
cctgctcagtttcagcaggcttggatgcaaaataaagtcccaattcctgccccaaacgag
gtattgaatgacagaaaagaagacattaaattggaagagaagaaaaaaacacaagcagaa
atcgaacaagagatggccacattacagtatactaacccacagcttctggagcaacttaaa
attgaaagacttgcacagaaacaggctgagcaaattcagcctcctccttcatctggcacc
cctctcctgggaccccagccctttccaggacaaggtccaatgtctcagattcctcaaggt
tttcaacagcctcatccatctcagcagatgccaatgaacatggctcaaatggggcctcca
ggtccacagggacagtttaggccccctggaccccagggacaaatgggaccacagggtcct
ccactgcatcagggaggtggggggccacaaggattcatgggaccacaagggccccagggc
ccaccccaggggttgccgaggcctcaggacatgcatgggccccaaggaatgcaaaggcat
cctggacctcatggccctttgggacctcaaggaccacctggaccacagggcacttctggt
cctcaaggtcatatgggtcctcagggcccacctggcccacaaggtcacataggcccccaa
ggcccacctggtccccagggtcacttgggccctcagggacctggtactcaaggtatgcag
ggaccacctggtcccagaggaatgcaaggacctccccatcctcatgggatgcaaggtggg
ccagggtctcaagggatccaaggtcctgtgtctcagggacctctgatgggattgaatcca
agaggaatgcagggtcctccaggcccccgagagaaccagggtcctgctccccaagggatg
atgctgggccacccgcctcaagagatgagaggacctcatcctccaagtggactgctggga
catggccctcaggagatgcgaggtcctcaggagatgcgaggcatgcaggggcctccaccc
caaggatcaatgatgggccctccccaggaattgcgagggcctccaggctcacaaggtcag
caggggccgccccagggctctttgggacctccaccccagggtggcatgcaagggccccct
ggacctcagggacagcagaacccggcaagagggccacatccatctcaagggccaatacca
ttccagcagcagaaaacagctctgctaggtgatgggccccgggcccccttcaaccaggaa
ggacagaacgcaggccccccacccttgataccaggcctagggcagcagggagcacaaggt
cgcatcccccctcttaatcctggacaaggacctggccctaacaaaggtgactcacgtggc
cctccgaaccatcacatgggcccaatgtcagagagacggcacgagcagagcagcggtccc
gagcacggtcccgagaggggtcctttccggggcggccaggactgcaggggtccccctgat
aggcgcggccctcaccccgacttccccgatgacttcagcagaccagatgacttccacccc
gacaagcgctttggccaccggttacgtgaatttgaggggcgaggaggacctttaccgcaa
gaagagaagtggaggcgtgggggccctgggcctccgtttcctcctgatcacagggagttc
agtgagggggatggccggggcgcggcccggggccctccaggggcgtgggaaggccgcaga
cctggagacgagcgcttcccccgggatcctgaggacccacggtttcgagggcgcagagaa
gaaagcttcagacgaggagcccccccaagacatgagggccgtgctccccccagaggaagg
gatggttttcctggtcccgaagactttggaccagaggagaattttgatgcttctgatgaa
acagcccgaggaagagatctcagaggtcgaggtcggggtgccccacgaggaggaaggaag
ggtttacttcccactcctgatgagttccctcgctttgaaggaggtcggaaaccagactcc
tgggatggaaatagagagccagggccaggtcatgaacatttccgtgatgctccccgccct
gaccatccccctcacgacggtcattccccagctagcagagaacggtcctcttctctccaa
ggcatggacatggcatccctaccaccccgaaagcgcccctggcatgatgggccaggaacc
tctgagcatagagaaatggaagccccagggggtccttctgaggatcgaggaggcaaaggc
cgagggggccccggaccttctcagagagtgccaaagtccggacgttccagctccttggat
ggagatcaccacgatggataccacagagatgaaccttttgggggccctccaggcagtggt
accccttctagagggggccggagtggcagtaactggggtagagggagtaacatgaactct
ggcccgccaaggcgaggagcttcaagggggggtggaaggggtcggtag

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