Phocoena phocoena (harbor porpoise): 136126493
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Entry
136126493 CDS
T11058
Symbol
NDC1
Name
(RefSeq) nucleoporin NDC1 isoform X1
KO
K14315
nucleoporin NDC1
Organism
pphc Phocoena phocoena (harbor porpoise)
Pathway
pphc03013
Nucleocytoplasmic transport
pphc05014
Amyotrophic lateral sclerosis
Brite
KEGG Orthology (KO) [BR:
pphc00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
136126493 (NDC1)
09160 Human Diseases
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
136126493 (NDC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pphc03019
]
136126493 (NDC1)
Messenger RNA biogenesis [BR:
pphc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
136126493 (NDC1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ndc1_Nup
Motif
Other DBs
NCBI-GeneID:
136126493
NCBI-ProteinID:
XP_065737732
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All DBs
Position
1:complement(45061739..45105596)
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AA seq
675 aa
AA seq
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MATAASQPCAGGPRDILWRVLGWRIVTSIVWSVLLLPICTTVFVIFSSIDLFHPIQWLSD
SFSDLYSSYIIFYLLLLSVVIVIISIFNVEFYTVVPSIPCSRLALIGKIIHPQQLMHSFI
HAAMGMMMAWCAAVITKGQYSFLVVPCTVTESLDSPAAQTCLNEYHLFFLLAGAFMGYSY
SLLYFINNMNYLPFPIIQQYKFLRFRRSLPLLVKHSCVESLFLLRNFCIVYYFLGHIPKA
WISTAMDLQLDEQFHRPLDTVSGLLNLSLLYHVWLCGVFVLMTWYISWILFKIYATEARL
FPVQPPFSEESDECLPKVLNSNPPLIIKYLALQDLMLLSQYSPSRRQEVFSLSQPGGHPH
SWTAISRECLNLLNDMTQKLVLYQEAAATNGRVMSSSYPVEPKKLNSPEETTFQTPKSSQ
MPRPSVPSLIKTSLFSSKLSTPDVASPLATPFGSSVVNRMAGIFDVNTCYASPQSPQLTR
RGPRLWTSASGQQMTEYSNPSPSTSVSAEGKTVRQPNVIYSWIQNKREQIKNFLSKRVLI
MYFFSKHPEASIQAVFSDAQMHIWALEGLSHLVAASFTEDRFGVVQTTLPAILNTLLTLQ
EAVDKYFKLPHASSKPPRISGSLVDTSYKTLRFAFRASLKTAIYRITTTFGEHLNAVQAS
AEHQKRLQQFLEFKE
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atggccactgctgcgagtcagccttgcgccggcggaccgcgggacatcctgtggcgcgtt
ttgggctggaggatagttacaagtattgtctggtcagtgctgcttctgcccatctgtacc
acagtatttgtcatcttcagcagcattgatttatttcatcctatacagtggctgtctgat
tctttcagtgatctgtatagttcctatataatcttttatcttctgctgctgtcagtggta
atagtaataataagtattttcaatgtggagttctatacagttgtgccttccattccttgc
tcgagactggcactgatagggaagatcattcatcctcagcagctcatgcactcctttatt
catgctgcaatgggaatgatgatggcttggtgtgctgcggtgataaccaagggtcaatac
agttttcttgtggttccctgcactgttactgagagcttagatagccctgctgcacaaacc
tgcttaaatgagtatcaccttttttttctgctggctggagcatttatgggctatagctat
agcctcctgtattttattaacaacatgaactatcttccatttcccatcatacagcaatac
aagttcttgcgcttcaggaggtctctgcctttgctagttaagcatagctgtgtggaatcg
ctgttcctgcttagaaatttctgcattgtgtattattttcttggccacattcccaaagct
tggattagcactgctatggaccttcagttagatgagcagtttcataggcctcttgacact
gtgagtggcctcttgaatctctcattactttaccatgtctggctctgtggtgtctttgtc
ctgatgacttggtacatctcgtggatcctcttcaaaatctatgccacagaggctcgtctg
ttccctgttcaaccaccattttcagaagagtcagatgaatgcctcccgaaagttttaaac
agcaatcctcccctcatcataaagtatttggccttgcaggacctgatgttgctttctcaa
tattctccttcacgaagacaagaagtttttagccttagccagccaggtggacatccccac
agttggacagccatttcaagagagtgtttgaatcttttaaatgatatgactcagaaactt
gtactctatcaagaagctgctgctacaaatgggagagtgatgtcttcatcctacccagtg
gaacctaagaaattgaattctccagaagaaactacttttcaaacccccaaatctagccag
atgcctcggccttcagtgccatcattaattaagacatcgttgttctcctcaaaattgtct
acacctgatgttgcaagtcccttggcgaccccatttggctctagtgtagtgaatcggatg
gctgggatttttgatgtaaacacgtgctatgcgtcacctcaaagtcctcagcttacaaga
agagggccaagattatggacttcggcttctggtcagcaaatgactgaatattctaatcct
tctccatctacctctgttagtgctgagggtaagacagtgagacagcccaatgtgatttat
tcatggattcagaataaacgtgaacagattaagaatttcttatcaaaacgggtgctgata
atgtattttttcagtaagcacccagaggcctccattcaggctgttttttcagatgcccaa
atgcatatttgggcattagaaggtctgtctcacttagtagcagcatcatttacagaagat
agatttggagttgtccagactacactaccagctattcttaatactttgttgacgctacaa
gaggcagttgataagtacttcaagcttcctcatgcttccagtaaaccacctcggatttca
ggaagcctagtggacacttcttataaaacattaagatttgcctttagagcatcactaaaa
actgccatctatagaataactactacatttggtgaacatctgaatgctgtgcaagcatct
gcagaacatcagaaaagacttcaacagttcttggagttcaaagaatag
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