Phocoena phocoena (harbor porpoise): 136126503
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Entry
136126503 CDS
T11058
Symbol
VPS11
Name
(RefSeq) vacuolar protein sorting-associated protein 11 homolog isoform X1
KO
K20179
vacuolar protein sorting-associated protein 11
Organism
pphc Phocoena phocoena (harbor porpoise)
Pathway
pphc04140
Autophagy - animal
pphc04148
Efferocytosis
pphc05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
pphc00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
136126503 (VPS11)
04148 Efferocytosis
136126503 (VPS11)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
136126503 (VPS11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pphc04131
]
136126503 (VPS11)
Membrane trafficking [BR:
pphc04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
136126503 (VPS11)
Hops complex
136126503 (VPS11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PEP5_VPS11_N
TPR_PEP5_VPS11
VPS11_N
VPS11_C
Clathrin
zf-C3HC4_2
zf-RING_2
zf-C3HC4
TPR_GEMI5
TPR_Vps41
zf-rbx1
zf-C3H2C3
zf-RING_UBOX
zf-RING_5
DUF1993
zf-RING_11
zf-ANAPC11
zf-C3HC4_3
zf-RING-like
zf_RING_Vps8_fungal
DLP_helical
DUF5847
Motif
Other DBs
NCBI-GeneID:
136126503
NCBI-ProteinID:
XP_065737744
LinkDB
All DBs
Position
8:complement(14161300..14170323)
Genome browser
AA seq
945 aa
AA seq
DB search
MAAYLQWRRFVFFDKELVKEPLGNDGAAPGAAPASGPSASKFLCLPPGITVCDSGRGSLV
FGDMEGQIWFLPRSLQLTGFQAYKLRVTHLYQLKQHNILASVGEDEEGINPLVCPQVKIW
NLEKRDGGNPLCTRIFPAIPGAEPTVVSCLTVHENLNFMAIGFTDGSVTLNKGDITRDRH
SKTQILHKGDYPVTGLAFRQAGKTTHLFVVTTENVQSYIVSGKDYPRVELDTHGCGLRCS
ALSDPSQDLQFIVAGDECVYLYQPDERGPCFAFEGHKLIAHWFRGYLVIVSRDRKVSPKS
EFTSRDSQSSDKQILNIYDLCNKFIAYSTVFEDVVDVLAEWGSLYVLTRDGRVHALQEKD
TQTKLEMLFKKNLFEMAINLAKSQHLDSDGLAQIFMQYGDHLYSKGNHDGAVQQYIRTIG
KLEPSYVIRKFLDAQRIHNLTAYLQTLHRQSLANADHTTLLLNCYTKLKDSSKLEEFIKT
KSESEVHFDVETAIKVLRQAGYYSHALYLAENHAHHEWYLKIQLEDIKNYQEALRYIGKL
PFEQAESNMKRYGKILMHHIPEQTTELLKGLCTDYRPSLEGRGDREAPGCRANSEEFIPI
FANNPRELKAFLEHMSEVQPDSPQGIYDTLLELRLQNWAHEQEPQVKEKLHAEAISLLKS
GRFCDVFDKALVLCQMHDFQDGVLYLYEQGKLFQQIVQYHMQHEQYRQVLAVCERHGAQE
PSLWEQALSYFARKEEDCKQYVAAVLKHIEGKNLMPPLLVVQTLAHNSTATLSVIRDYLV
QKLQKQSQQIAQDELRVRRYREETTRIRQEIQELKASPKIFQKTKCSICNSALELPSVHF
LCGHSFHQHCFESYSESDADCPTCLPENRKVMDMIRAQEQKRDLHDQFQHQLKCSNDSFS
VIADYFGRGVFNKLTLLTDPPTARLTASLEAGLQRDLLIHARRGT
NT seq
2838 nt
NT seq
+upstream
nt +downstream
nt
atggcggcctacctgcagtggcggcgtttcgttttcttcgataaggagctggtgaaggag
ccactgggcaatgatggggctgctcccggggctgcgcctgcctctggaccctctgcttcc
aagttcctttgcctccctcctggcatcactgtctgcgactcaggccgagggagcctagtc
tttggagacatggaaggccagatatggttcttgccccgctccctacagcttaccgggttc
caggcttacaaactacgggtgacacacctgtaccagttgaagcagcacaacattctggca
tctgttggtgaggatgaagaggggatcaaccccctggtctgtccacaggtaaagatctgg
aacctggagaagagagatggtggcaatccactctgcactcgaatcttccctgccatccca
ggggcagagccgactgttgtatcttgtttgactgtccatgaaaatctcaactttatggcc
atcggtttcacagatggcagtgttacactgaacaaaggggacatcactcgggaccggcat
agcaagacccagattttgcacaagggcgactatcctgttaccggactggcctttcgccaa
gcaggaaagaccactcacttgtttgttgtgacaactgagaatgttcagtcctacatagtt
tctggaaaggactaccctcgtgtggaattggacacccacggttgtggcctgcgctgctca
gccctaagcgacccttctcaggacctgcagttcatagtggcaggggatgaatgtgtctac
ttataccagcctgatgaacgggggccctgcttcgcctttgagggccataaactcattgct
cactggtttagaggctaccttgtcattgtctcccgtgaccggaaggtttctcccaagtca
gagtttaccagcagggactcccagagctccgacaagcagattctcaacatctatgacctg
tgcaacaaattcatagcctatagcaccgtctttgaggatgtagtggatgtgcttgctgag
tggggctccctgtacgtgctgacgcgggatgggcgggtccacgcactgcaggagaaggac
acacagaccaaactggagatgctgtttaagaagaacctattcgagatggcgattaatctg
gccaagagccagcatctggacagtgacgggttggcgcagatcttcatgcagtatggggac
catctctacagcaagggcaaccatgatggggctgtccagcagtatatccgaaccattgga
aagttggagccatcgtatgtgatccgcaagttcctggatgcccagcgcatccacaacctg
acggcttacctgcagaccctgcaccggcagtccctggccaatgccgaccacaccacccta
ctgctcaactgctacacaaagctcaaggacagctcgaagctggaggagttcatcaagaca
aagagtgagagtgaagtccactttgatgtggagacagccatcaaggtcctccggcaggct
ggctactactcccatgccctctatttggctgagaaccacgcacatcacgagtggtacttg
aagatccagctagaggacatcaagaattatcaggaagcccttcgatacattggcaagctt
ccttttgagcaggcagagagcaacatgaaacgctacggcaagatcctcatgcaccacata
ccagagcagacgaccgagttgctgaagggactttgtaccgactatcggcccagccttgaa
ggccgaggcgatagggaggctccaggctgcagggccaactcagaggagttcatccccatc
tttgccaacaacccgcgggagctgaaagctttcctagagcacatgagtgaggtgcagcct
gactccccgcagggcatctatgacacgctcctggagctgcgactccagaactgggctcac
gagcaggagccgcaggtcaaagagaagcttcacgcagaggccatctccctcctgaagagt
ggtcgcttctgtgatgtctttgacaaagccctggtcctctgccagatgcacgacttccag
gatggggtcctttacctctatgagcaggggaaactgttccagcagatcgtgcagtaccac
atgcagcacgagcagtaccggcaggtgctcgccgtgtgcgagcgccacggggcgcaggag
ccctccctgtgggaacaggcgctcagctacttcgcccgcaaggaggaggactgcaagcag
tacgtggcggccgtgcttaagcacatcgagggcaagaacctcatgccgcctctcctagtg
gtgcagaccctggcccacaactccacagccaccctgtctgtcatccgggactacctggtc
caaaaactgcagaagcagagccagcagatcgcgcaggacgagctccgggtgcggcgctac
cgagaggagaccacccgtatccgccaggagatccaggagctgaaggcgagtccgaagatt
ttccagaagaccaagtgcagtatctgtaacagtgccttggagttgccctcagtccacttt
ctctgcggccactccttccaccagcactgctttgagagttactcagaaagtgatgccgac
tgccccacctgcctccctgaaaaccgcaaggtcatggatatgattcgggcccaggaacag
aagcgagatctccatgaccagttccagcaccagctcaagtgctccaacgacagcttctct
gtgattgctgactactttggccgaggtgttttcaacaaattgactctgctgaccgacccg
cccacagcccgactgactgcgagcctggaggctgggctgcagagggacttgctcatacac
gccaggaggggcacttaa
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integrated database retrieval system
