Phocoena phocoena (harbor porpoise): 136126606
Help
Entry
136126606 CDS
T11058
Symbol
PATL1
Name
(RefSeq) protein PAT1 homolog 1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
pphc Phocoena phocoena (harbor porpoise)
Pathway
pphc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pphc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
136126606 (PATL1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pphc03019
]
136126606 (PATL1)
Messenger RNA biogenesis [BR:
pphc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
136126606 (PATL1)
mRNA degradation factors
5'-3' decay
Decapping complex
136126606 (PATL1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
136126606
NCBI-ProteinID:
XP_065737946
LinkDB
All DBs
Position
8:complement(99212073..99247507)
Genome browser
AA seq
771 aa
AA seq
DB search
MFRYESLEDCPLDEDEDAFQGLGEEDEEIDQFNDDTFGSGAVDDDWQEAHERLAELEEKL
PVAVNEQTGNGERDEMDLLGDHEENLAERLSKMVIENELEDPAIMRAVQTRPVLQPRPGS
LNSSIWDGSEVLRRIRGPLLAQEMPTVSVLEYALPQRPPQGPEDDRDVSERALPRRSTSP
IIGSPPVRAVPIGTPPKQMAVPSFNQQVLCPKPVHVRPPMPPRYPAPYGERMSPNQLCSV
PNSSLLGHPFPPSVPPVLSPLQRAQLLGGAQLQPGRMSPSQFARVPGFVGSPLAAMNPKL
LQGRVGQMLPPAPGFRAFFSAPAPATPPPPQQHPPGPGPHLQNLRSQAPMFRPDTTHLHP
QHRRLLHQRQQQNRNQHRNLNGAGDRGSHRSSHQDHLRKDPYANLMLQREKDWVSKIQMV
QLQSTDPYLDDFYYQNYFEKLEKLSAAEEVQGDGPKKERTKLITPQVAKLEHAYKPVQFE
GSLGKLTVSSVNNPRKMIDAVVTSRSEDDETKEKQVRDKRRKTLVIIEKTYSLLLDVEDY
ERRYLLSLEEERPALMDERKHKICSMYDNLRGKLPGQERPSDDHFVQIMCIRKGKRMVAR
ILPFLSTEQAADILMTTARNLPFLIKKDAQDEVLPCLLSPFSLLLYHLPSVTVTSLLQQL
MNLPQSAAAPAPSSPHLTAVLQNKFGLSLLLVVLSRGEDLQGSDPTSESTQSNQWTEVMF
VATRELLRIPQAALAKPVSIPTNLVSLFSRYVDRQKLNLLETKLQLVQGIR
NT seq
2316 nt
NT seq
+upstream
nt +downstream
nt
atgttccgctacgagtctttggaggattgtcctctggatgaagatgaagatgcatttcag
ggcctgggagaggaagatgaagagattgatcaattcaatgatgatacatttgggtcaggt
gcagttgatgatgattggcaggaagcacatgagcgcctggctgaattggaagaaaagctg
cctgtggcggttaatgaacaaacaggcaatggagaaagggatgagatggacttgttgggt
gatcatgaggagaatctggcagaaaggctcagtaagatggtgattgaaaatgaactagaa
gatccagctatcatgagggcagtacagaccaggccagtgttgcaaccccggccaggaagt
ctcaattccagcatctgggatggatctgaagttctgaggcgaatccgaggaccactgctt
gctcaggaaatgcctacagtgtctgtgttagaatatgccttgcctcagaggcccccacag
ggcccagaagatgatcgggacgtttctgagcgtgcattaccgaggcggtcaacttcacct
atcattgggagtcctcctgttagagctgtccccataggcaccccacctaagcagatggct
gtacccagcttcaaccaacaggttctgtgtccgaagcctgtccatgttcgacccccaatg
ccaccacgctatcctgctccctacggtgagaggatgtctccaaaccagctctgcagtgtc
ccgaactcttccctactgggtcaccctttccctcctagtgttcctcctgttctcagcccc
ctccagagagcccagcttcttggaggagcacagctacagcctggacggatgtctcccagc
cagtttgcacgggtccctggatttgttggtagtccacttgctgccatgaatcccaagttg
ctgcaagggcgagttgggcagatgcttcccccagcaccaggcttccgtgccttctttagt
gctccagcccctgctacaccgcctcctcctcagcagcaccctcctggcccagggcctcac
ctgcaaaacctaagatcacaggccccaatgtttagaccagacacaacccaccttcatcca
cagcaccgtcgactcttgcatcagagacagcaacagaataggaatcagcatcggaatctc
aatggtgcaggagatagaggaagtcaccggagcagtcatcaggatcatctccgaaaggat
ccatatgccaatctcatgttgcagcgagaaaaagattgggtctctaaaatccagatggtg
cagctgcaaagcactgatccctacctggatgatttttattaccagaattattttgaaaaa
ctggagaaactgtcagctgctgaagaagtgcaaggtgatggcccaaaaaaggagcgcacc
aagctcattacccctcaggtggccaaactggagcacgcctataagccagtgcagtttgag
ggctctttgggaaagcttactgtctctagtgtgaataatccccgaaaaatgattgatgct
gttgtgacatctcggagtgaggatgatgagacaaaagaaaaacaggttcgggacaaaaga
cgaaaaacccttgtcataattgagaagacctatagcttactccttgatgtggaggattat
gaaaggcgttacctcctaagtctggaagaagagcgacctgccctgatggatgaaagaaag
cacaaaatctgtagcatgtatgacaacttaagggggaaattgcctggacaggagaggccc
agtgatgaccactttgtacagatcatgtgcatcagaaaagggaagagaatggttgcccgt
attcttcctttcctctccacagagcaagcagctgacattctcatgacaacagccaggaac
ctccctttccttatcaagaaggatgcacaagatgaggtgctgccatgcttattgagtccc
ttctctcttctcctctatcatcttccatcagtgactgtcaccagccttctgcaacagcta
atgaacctacctcagagtgcagctgcaccagcaccctccagtcctcacctcactgctgtg
ctccagaacaagttcggcctgtcactgcttctcgtcgtgctgagccggggggaagacctg
cagggctcagaccccacttcagaatcaacgcagagcaaccagtggacggaggtgatgttc
gtggcaacccgagaacttctgcggattccccaggcagccctggccaagccagtctctata
cccacaaatctagtatccctgttttctcgttacgttgaccgacagaaactgaacttgctg
gagacaaaactgcagctagttcaggggatacgataa
DBGET
integrated database retrieval system
