Phocoena phocoena (harbor porpoise): 136126841
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Entry
136126841 CDS
T11058
Name
(RefSeq) LOW QUALITY PROTEIN: cullin-4B-like
KO
K10609
cullin 4
Organism
pphc Phocoena phocoena (harbor porpoise)
Pathway
pphc03420
Nucleotide excision repair
pphc04120
Ubiquitin mediated proteolysis
pphc05170
Human immunodeficiency virus 1 infection
Brite
KEGG Orthology (KO) [BR:
pphc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
136126841
09124 Replication and repair
03420 Nucleotide excision repair
136126841
09160 Human Diseases
09172 Infectious disease: viral
05170 Human immunodeficiency virus 1 infection
136126841
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pphc04121
]
136126841
03400 DNA repair and recombination proteins [BR:
pphc03400
]
136126841
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pphc04147
]
136126841
Ubiquitin system [BR:
pphc04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Cullin
136126841
DNA repair and recombination proteins [BR:
pphc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
136126841
TCR (transcription coupled repair) factors
Cul4-CSA complex
136126841
Exosome [BR:
pphc04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
136126841
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cullin
Cullin_Nedd8
SecA_SW
COG4_N
CCDC85
NUP120_helical_2
RMI1_N_N
Motif
Other DBs
NCBI-GeneID:
136126841
NCBI-ProteinID:
XP_065738392
LinkDB
All DBs
Position
1:complement(39650912..39653959)
Genome browser
AA seq
911 aa
AA seq
DB search
MFPTGFSSPNPSAAAPAAQEVRSATDGSTSTTPPWCNTSTTTTSAKKRKLNSSSSGSNSS
NDREDFDSTSPSSSTPLQPRDSAPPSTSSFSCLGVSVAAPSHVWIQKKLRFEDTLGCVGF
DAKMAEESSSSSSPSSTAATSQQQQLKNKSILISSVASVHHTNGLAKSSTTVSSFANSKP
GSAKKLVIKNFKDKPKLPESYTDETWQKLQKAVEAIQDSTSIKNNLEELYQSMENLCSYK
ISANLCKQLRQICEDHMKAQIHQFREDSLDRVLFLKKIDRCWQNHCRQMIMISSSFLFLD
RTYVLQNSMLPGFPGGAPVLRNGRGHSSGRPAYCKKKKKKNSMLPSIWKRNSEAIDRSLL
RSLLSMLSDLQIYQDYFEQRFLEGTNRFYAAEGQKLMQEREVPEYLHHVNKRLEEEADRL
ITYLDQTTQKSLIATVEKQLLGEHLTEILQKDLNKLLDKNRIQDLSHLYQLFSKVRGGIQ
VLLQQWIEYIKAFGSTIVVNPEKDKTMVQELLAFKDKVDHIIDICFLKNEKHINAMKEAL
ETFINKRPNKPAELIAKYADSKLLAGNKEATDEELEKMLDKIIIFIYFSPMIIFRFIYGK
DVFEAFYKKDLAKXPVGKSASVDAEKSMLSKLKHECGAAFTSKLEGTFKDMELSKDIMIQ
FKQYMQNQNVPGNIELTVNILTVGHWPTYVPMEVHLPPEMVKFPEIFKTFYLGKHSGRKP
QWQSTLGRCVLKAEFKEGKKELQFSLFQTLVLLMFNEGEELSLEEIRQATGIEARELGRT
LQSLACGKARVLMTNPKGKAIEDGDKFICNDDFKHKLFRIKVNQIQMKEMVEELASTTER
VYRDXYEMDAAIVQIMKIRKTLSHNLLVSEVYNQLKFPVKPADLKKRRESLTDLDYMERD
KENPNQYNYIA
NT seq
2736 nt
NT seq
+upstream
nt +downstream
nt
atgtttccaacaggtttttcttcccccaatccctccgctgctgcccctgctgctcaggag
gtcagatctgccactgatggtagtaccagcaccaccccgccctggtgtaataccagcacc
accactacctctgccaagaagagaaagttaaacagcagcagtagcggcagtaacagtagt
aacgacagagaagactttgattccacctctccctcctcttccactcctttacaacccagg
gattcggcacccccttcaacctcgtccttctcctgcctgggggtttcagtggctgctccc
agccacgtatggatacagaagaagctgcgttttgaagacaccctggggtgtgtagggttt
gatgcgaagatggctgaggaatcctcctcctcctcttcaccttcatcaactgctgcaaca
tctcagcagcagcaacttaaaaataagagtatattaatctcttctgtggcttcggtgcat
cacacaaacggcctagccaaatcttctaccaccgtctctagttttgccaacagcaagcct
ggctctgctaagaagttagtgatcaagaactttaaagataagcctaaattaccagaaagc
tacacagatgaaacatggcagaaactgcaaaaagcagtggaagccatccaggatagtact
tcaattaagaacaatttagaagaactttatcagtctatggaaaacctctgttcttacaag
atttctgcaaacttgtgcaaacagctgagacagatttgtgaagatcatatgaaagcacaa
attcatcagttcagagaggattcattggatagagttctttttctaaagaagatcgataga
tgttggcaaaaccattgcagacaaatgatcatgatcagtagcagttttttgtttctggat
aggacttacgttcttcaaaattcaatgctgccgggcttccctggtggcgcacctgtgctc
cgcaacgggagaggccacagcagtgggaggcccgcgtactgcaaaaaaaaaaaaaaaaaa
aattcaatgctaccttccatttggaaaaggaatagtgaagcaattgatagaagtttactc
cgaagccttttaagcatgctctctgatttgcaaatttatcaggattattttgaacaacga
tttttggaaggaactaaccgattctacgcagctgaaggccaaaaattaatgcaggaaaga
gaggttcctgaatatcttcatcatgttaacaaacgtctagaagaagaagcagacagactt
attacttacttagatcagaccacccaaaagtcattaattgctactgtggaaaaacaactt
ctaggtgaacacttaacagagattcttcagaaagatttaaataaactccttgataaaaac
cgaattcaagatttatctcacctgtatcagctcttcagtaaagttcgaggtggcatccag
gttctcttgcagcaatggattgaatacattaaggcatttggtagcactattgtagttaat
cctgaaaaggataaaaccatggttcaagaattgctggcttttaaagataaggttgaccat
ataattgatatctgtttcctgaagaatgaaaaacatatcaatgccatgaaagaagcattg
gaaacattcattaacaaaagaccaaacaaacctgctgaacttatagctaagtatgcagat
tcaaagcttctcgcaggcaacaaagaagctacagatgaagaacttgagaaaatgttggat
aagattattatatttatttatttttcccctatgattatatttagattcatctatggcaag
gatgtttttgaggccttctataagaaagatttagccaagntgcctgttgggaagagtgca
tctgtggatgctgaaaaatcaatgctgtccaaacttaaacatgaatgtggagctgctttc
accagcaaacttgaaggaacgtttaaagacatggaactttctaaagacatcatgattcaa
ttcaaacagtatatgcagaaccagaatgtacctgggaatattgaattaactgtgaatatc
ctgacggtgggtcattggccaacatatgtgcctatggaagttcatttaccaccagagatg
gtaaaatttccggagattttcaagaccttttacctaggcaaacatagtggcaggaaacct
cagtggcagtcaaccctaggacgctgtgtgctaaaggcagaatttaaagagggtaaaaag
gaactccagttctctctttttcaaacactggtgctgctgatgttcaatgagggagaggag
ttaagtttggaagagatcaggcaggctacaggaatagaggctagagagttagggagaacc
ctgcagtcattggcctgtggcaaagctagagttctgatgacaaacccaaagggtaaagct
atagaagatggtgacaagttcatttgtaatgacgatttcaagcacaaacttttcaggata
aaggtcaatcaaattcagatgaaagaaatggttgaggaactagcaagcactacagaaaga
gtatatcgggacnagtatgaaatggatgctgcaattgttcaaattatgaagataagaaag
acacttagccacaaccttcttgtttcagaagtgtacaaccagttgaaatttcccgtaaag
cctgctgatcttaagaagagaagagaatccttaactgacctggactacatggaaagagat
aaagaaaatccaaaccagtacaactatattgcataa
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integrated database retrieval system
