Phocoena phocoena (harbor porpoise): 136127310
Help
Entry
136127310 CDS
T11058
Symbol
RAG1
Name
(RefSeq) V(D)J recombination-activating protein 1
KO
K10628
V(D)J recombination-activating protein 1 [EC:
2.3.2.27
]
Organism
pphc Phocoena phocoena (harbor porpoise)
Pathway
pphc04068
FoxO signaling pathway
pphc05340
Primary immunodeficiency
Brite
KEGG Orthology (KO) [BR:
pphc00001
]
09130 Environmental Information Processing
09132 Signal transduction
04068 FoxO signaling pathway
136127310 (RAG1)
09160 Human Diseases
09163 Immune disease
05340 Primary immunodeficiency
136127310 (RAG1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pphc04121
]
136127310 (RAG1)
Enzymes [BR:
pphc01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
136127310 (RAG1)
Ubiquitin system [BR:
pphc04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
136127310 (RAG1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RAG1_imp_bd
RAG1_ZnH2
RAG1_RNase_H
RAG1_C
RAG1_pre-RNase_H
RAG1
RAG1_ZnC2
RAG1_DNA-bd
zf-RAG1
zf-C3HC4
zf-C3HC4_2
zf-RING_6
zf-RING_2
zf-RING_10
zf-RING_UBOX
Motif
Other DBs
NCBI-GeneID:
136127310
NCBI-ProteinID:
XP_065738884
LinkDB
All DBs
Position
8:87813444..87816575
Genome browser
AA seq
1043 aa
AA seq
DB search
MAVSLPPTLGLSSAPDEIQYPHIKFSEWKFKLFRVRSFEKAPENAQAEKQDSSEGKPSLE
QSPAVLDTPGGQKPALTQLALKSHPKFLKKSHDDRKARDKAMHQANLRHLCRICGNPFKA
DGHNRRYPVHGPVDGKTQVLLRKKEKRATSWPDLIAKVFRVDVKADVDSIHPTEFCHNCW
SFMHRRFSSAPCEAYSPRNATMEWSSHTTPCDICHIARQGLKRKRHQPSAQLSKKLRTVI
DRAREVRRRKRRAQTGISSKELKKKIASCSKIHLSTQLLTLDFPAHFVKSVSCQICEHIL
ADPVETSCKHVFCRICILRCLKVMGNYCPSCRYPCFPTDLESPVKSFLSILNSLMVKCPA
KECNEEVSLEKYNHHVSSHKESKETFVHINKGGRPRQHLLSLTRRAQKHRLRELKLQVKA
FADKEEGGDVKSVCLTLFLLALRARNEHRQADELEAIMQGWGSGLQPAVCLAIRVNTFLS
CSQYHKMYRTVKAITGRQIFQPLHALRSAEKVLLPGHHPFEWQPPLKNVSSSTDVGIIDG
LSGLSSSVDDYPVDTIAKRFRYDSALVSALMDMEEDILAGMRDQDLEDYLDGPFTVVVKE
SCDGMGDVGEKHGSGPAVPEKAVRFSFTIMKITIAHGSQNVKVFEEAKPNSELCCKPLCL
MLADESDHETLTAILSPLIAEREAMKSSKLMLEMGGILRTFKFIFRGTGYDEKLVREVEG
LEASGSVYICTLCDATRLEASQNLVFHSITRSHVDNLERYEVWRSNPYHETVEELRDRVK
GVSAKPFIETVPSIDALHCDIGNAAEFYKIFQLEIGEVYKNPSASKEERKRWQAALDKHL
RKKMNLKPIMRMNGNFARKLMTKETVEAVCELIPSEERHEALRELMDLYLKMKPVWRSSC
PAKECPESLCQYSFNSQRFAELLSTKFKYRYEGKITNYFHKTLAHVPEIIERDGSIGAWA
SEGNESGNKLFRRFRKMNARQSKCYEMEDVLKHHWLYTSKYLQKFMNAHNALKASGFTIN
SQGSLGDSLDLEDSPESQNSMEF
NT seq
3132 nt
NT seq
+upstream
nt +downstream
nt
atggctgtctctttgccacccaccctgggactcagttccgccccagacgaaatccagtac
ccacatattaaattttcagaatggaaatttaagctattcagggtgagatcctttgaaaag
gcacctgaaaatgctcaagcggaaaagcaagattcctccgaagggaaaccctctctagag
caatctccagcagtcctggacacgcctggtggtcagaaaccagctctgactcaactggca
ttgaagtcccacccaaagtttctgaagaaatcccatgatgacaggaaagcaagagacaaa
gccatgcaccaagccaacctgagacatctctgccgcatctgcgggaatcctttcaaagcc
gatgggcacaataggaggtacccagtccatgggcctgtggatggtaaaacccaagtcctt
ttacgaaagaaggaaaaaagggccacgtcctggccagacctcattgccaaggttttccgg
gtcgatgtgaaggccgatgtggactcgattcatcccactgagttctgccataactgctgg
agcttcatgcataggaggtttagcagtgccccgtgtgaggcttactccccaaggaatgca
accatggagtggtcctcccacacaacaccctgtgacatctgccacattgcccgtcaggga
ctcaagaggaagcgtcatcagccaagcgcacagctcagcaaaaaactcagaactgtgatt
gaccgagcgcgagaagtccgtcggcgcaagaggagagctcagaccgggatcagcagcaag
gaactgaagaagaaaatcgccagctgcagtaagatacatctcagtacccagctcctgaca
ctggacttcccggcgcactttgtgaaatctgtctcctgccagatttgtgaacacattctg
gcggaccctgtagagaccagctgtaagcatgtattttgcaggatctgcattctcagatgc
ctcaaagtcatgggaaattattgtccttcttgccggtacccctgcttccctactgacctg
gagagtccagtgaagtcttttctgagcatcttgaattccctgatggtgaaatgtccagcc
aaagagtgtaatgaggaggtcagcttggaaaaatataatcaccatgtctcaagccacaag
gaatcgaaagagactttcgtgcatattaataaagggggccggccccgccagcatctcctg
tccctgacccggagggctcagaagcaccgtctgagggagctcaagctgcaagtcaaggct
ttcgctgacaaagaagaaggtggagatgtgaagtcggtgtgcctgaccttgttcctgctg
gctctgagggcaaggaatgagcacagacaagctgatgagctggaggccatcatgcaggga
tggggctccggcctgcagccggctgtttgcttggccatccgtgtcaacaccttcctcagc
tgcagccagtaccacaagatgtacaggactgtgaaggccatcacaggcaggcagattttc
cagcctttgcacgcccttcggagtgctgagaaggtccttctgccaggccaccaccccttc
gagtggcagccacctctgaagaacgtgtcttccagcactgacgtgggcattattgatgga
ctgtctggattgtcctcttctgtggacgattacccggtggacaccatcgccaagcgcttc
cgctatgattcagctttggtgtctgctctgatggacatggaagaagacatcctggcgggc
atgagagaccaagaccttgaggactacctggatggccccttcaccgtagtggtgaaggag
tcttgtgatgggatgggagacgtgggtgagaagcacggcagtgggccagcagttccggaa
aaggcagttcggttttccttcacgatcatgaaaatcaccatcgctcacgggtcacagaac
gtgaaggtgtttgaggaagccaagcctaactctgaactgtgttgcaagcccttgtgcctc
atgctggcagatgagtctgaccacgagaccctgacggccatcctgagccctctcattgcc
gagagggaggccatgaagagcagcaaattaatgcttgagatgggaggcatcctccggact
ttcaagttcatctttaggggcaccgggtatgatgagaaacttgtccgggaagtggaaggc
ctcgaggcttcgggctcagtctacatttgtaccctttgtgatgccacccgcctggaagcc
tctcaaaatcttgtcttccactccatcaccagaagccacgttgataatctggagcgctat
gaggtctggcgttccaacccataccatgagacggtggaggaactgcgggaccgggtgaag
ggggtctcggccaaacccttcattgagacggtcccttccatagatgcactccactgcgac
atcggcaacgcagctgagttctacaagattttccagctggagataggggaggtgtataag
aaccccagtgcctccaaagaggagaggaaaagatggcaggctgccttggacaagcacctc
cggaagaagatgaatctgaaaccgatcatgaggatgaatggcaactttgccaggaagctc
atgaccaaagagacggttgaagcagtttgtgaattaattccctccgaggagaggcacgaa
gctctgagggaactaatggacctttatttgaagatgaaacccgtctggcggtcatcatgc
cccgctaaggagtgcccagaatccctctgccagtatagcttcaattcacagcgttttgct
gagctcctctccaccaagttcaagtatagatacgagggcaagatcaccaattattttcac
aaaaccctggctcacgtccctgaaattattgagagggatggctccattggggcctgggca
agtgagggaaatgagtctggcaacaaactgttcaggcgcttccggaaaatgaatgccagg
cagtccaagtgctacgaaatggaagatgtcttgaaacatcactggctgtatacctccaag
tacctgcagaagtttatgaatgctcataatgcattgaaagcttcagggtttaccataaac
tcccagggaagcttaggggactcattagacctagaggactctccagaatctcaaaattca
atggaattttaa
DBGET
integrated database retrieval system
