Phocoena phocoena (harbor porpoise): 136127495
Help
Entry
136127495 CDS
T11058
Symbol
CLP1
Name
(RefSeq) polyribonucleotide 5'-hydroxyl-kinase Clp1 isoform X1
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
pphc Phocoena phocoena (harbor porpoise)
Pathway
pphc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pphc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
136127495 (CLP1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pphc03019
]
136127495 (CLP1)
Enzymes [BR:
pphc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
136127495 (CLP1)
Messenger RNA biogenesis [BR:
pphc03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
136127495 (CLP1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CLP1_P
CLP1_N
Clp1
AAA_18
TniB
ATP_bind_1
MMR_HSR1
AAA_16
AAA_22
nSTAND3
CbiA
Motif
Other DBs
NCBI-GeneID:
136127495
NCBI-ProteinID:
XP_065739117
LinkDB
All DBs
Position
8:98355256..98357399
Genome browser
AA seq
425 aa
AA seq
DB search
MGEEANDDKKPTTKFELERETELRFEVEASQSVQLELLAGMAEIFGTELTRNKKFTFDAG
AKVAVFTWHGCSLQLSGRTEVAYVSKDTPMLLYLNTHTALEQMRRQAEKEEERGPRVMVV
GPTDVGKSTVCRLLLNYAVRLGRRPTYVELDVGQGSVSIPGTMGALYIERPADVEEGFSI
QAPLVYHFGSTTPGTNIKLYNKITSRLADVFNQRCEVNRRASVSGCVINTCGWVKGSGYQ
ALVHAASAFEVDVVVVLDQERLYNELKRDLPHFVRTVLLPKSGGVVERSKDFRRECRDER
IREYFYGFRGCFYPHAFNVKFSDVKIYKVGAPTIPDSCLPLGMSQEDNQLKLVPVSPGRD
MVHHLLSVSSAEGTEENLSETSVAGFIVVTSVDLEHQVFTVLSPAPRPLPKNFLLIMDIR
FMDLK
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atgggagaggaggccaatgatgacaagaagccaaccactaaatttgaactagagcgagaa
acagaacttcgctttgaggtggaggcatctcagtcagttcagttggagctgctcgctggc
atggcagaaatctttggcacagagctgacccgaaacaagaaattcacctttgatgctggt
gccaaggtggctgttttcacttggcacggctgttctctacagctcagtggccgcaccgag
gtggcttatgtctccaaggacacccctatgttgctttatctcaacactcatacagccttg
gagcagatgcggaggcaggcggagaaggaagaagagcgagggccccgggtgatggtagtg
ggccccactgacgtgggcaagtccacagtgtgccgtctgctgctcaactatgcagtgcgt
ttgggccgccggcccacttacgtggagttggatgtgggccagggctctgtgtccatccct
ggtaccatgggggccctctacattgagcggccagcagatgttgaagagggattctctatc
caggcccctctggtgtatcattttggctccaccactcctggcaccaacatcaagctttat
aataagattacatctcgtttagcagatgtgttcaaccaaaggtgtgaagtgaaccgaagg
gcctctgtgagtggctgtgtcattaacacctgtggctgggtcaagggctctggttaccaa
gcactggtgcatgcagcctccgcctttgaggtggacgtagttgtggttctggatcaagaa
cgactgtacaatgaactgaaacgggacctacctcactttgtacgcaccgtgctgctccct
aaatccgggggcgtggttgagcgctccaaggacttccggcgggaatgtagggatgagcgt
atccgcgagtatttctatggattccggggctgtttctatccccacgccttcaatgtcaaa
ttttcagatgtgaaaatctacaaagttggggcacccaccatcccagactcctgtctgcct
ttgggcatgtctcaggaggacaatcagctcaagctagtgcccgtcagccctggccgagac
atggtgcaccacctcctgagtgtcagctctgctgagggcacagaggagaacctttcagag
accagtgtggccggcttcatcgtggtgaccagtgtggacctagagcatcaggtgtttact
gttctctctccagccccccgcccactgcctaagaacttccttctcatcatggatatccgg
ttcatggatcttaagtag
DBGET
integrated database retrieval system
