Phocoena phocoena (harbor porpoise): 136127834
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Entry
136127834 CDS
T11058
Symbol
VPS50
Name
(RefSeq) syndetin isoform X1
KO
K23288
syndetin
Organism
pphc Phocoena phocoena (harbor porpoise)
Brite
KEGG Orthology (KO) [BR:
pphc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pphc04131
]
136127834 (VPS50)
Membrane trafficking [BR:
pphc04131
]
Protein recycling
Others
EARP complex
136127834 (VPS50)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps54_N
Syndetin_C
SAC9_GBDL_2nd
Motif
Other DBs
NCBI-GeneID:
136127834
NCBI-ProteinID:
XP_065739534
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All DBs
Position
9:complement(49299764..49439892)
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AA seq
964 aa
AA seq
DB search
MQRIKSLMTRQGLKSPPESLSDVGAIESLRVPGKEEFRELREQPSDPQAEQELINSIEQV
YFSTDSFDIVKYELEKLPPVLNLQELEEYRDKLKQQQAAVSKKVADLILEKQPAYVKELE
RVTSLQTGLQLAAVICTNGRRHLNIAKEGFTQASLGLLANQRKRQLLIGLLKSLRTIKTL
QRTDVRLSEMLEEEDYPGAIQLCLECQKAASTFKHYSCISELNSKLQDTLEQIEEQLDVA
LSKICKNFDINHYTKVQQAYRLLGKTQTAMDQLHMHFTQAIHNTVFQVVLGYVELCAGNT
DTKFQKLQYKDLCTHVTPDSYIPCLADLCKALWEVMLSYYRTMEWHEKHDSEDTTSASEG
SNIMGTEETNFDRGYIKKKLEHGLTRIWQDVQLKVKTYLLGTDLSIFKYDDFIFVLDIIS
RLMQVGEEFCGSKSEVLQESIRKQSVNYFKNYHRTRLDELRMFLENETWELCPVKSNFSI
LQLHEFKFMEQSRSPSVSPNKQPSSTSSKMVTLFEQYCSGGNPFEIQADHKDEETEDVLA
SNGYESDEQEKSAYQEYDSDSDVPEELKQDYVDEQTGDAPVKSVSRETLKSRKKSDYSLN
KVNAPILTNTTLNVIRLVGKYMQMMNILKPIAFDVIHFMSQLFDYYLYAIYTFFGRNDSL
ESTGLGLSSSRLRTTLNRIQESLIDLEVSADPTATLTAAEERKEKVPSPHLSHLVVLTFG
DTLYGLAERVVATESLVFLAEQFEFLQPHLDAVMPAVKKPFLQQFYSQTVSTASELRKPI
YWIVAGKAIDYEQMLLLMANVKWDVKEIMSQHNIYVDALLKEFEQFNTRLNEVSKRVRIP
LPVSNILWEHCIRLANRTIVEGYANVKKCSNEGRALMQLDFQQFLMKLEKLTDIRPIPDK
EFVETYIKAYYLTENDMERWIKEHREYSTKQLTNLVNVCLGSHINKKARQKLLSAIDDID
RPKR
NT seq
2895 nt
NT seq
+upstream
nt +downstream
nt
atgcaaagaatcaaatctcttatgacccggcagggtctgaaaagtcccccagagagcctc
agtgatgttggtgccattgagagtctccgggtccctggaaaggaggaattccgagaactt
cgagaacaacctagtgatcctcaagctgaacaagaactaattaatagtatcgaacaagtg
tatttttctacggactcatttgatattgttaaatatgagctggagaagctccctcctgtt
ctcaatttgcaagaattagaggagtacagagacaaattaaaacaacagcaagctgcagtc
tctaaaaaagtagcagatttaatccttgaaaaacagcctgcttatgtaaaggaacttgaa
agagttacctcattacagacaggtcttcagttagctgctgttatctgcacaaatgggagg
agacacttgaatattgcaaaggaaggttttactcaagctagtttaggccttcttgcaaat
caaaggaaacgtcagttgctgattggacttctgaaatctctgagaactataaaaacattg
caaagaacagatgtccgcttaagtgaaatgctggaggaggaagactatccgggagctatt
cagctgtgcctggaatgtcagaaagctgccagcacttttaaacattatagttgcataagt
gaactgaattcaaagctgcaagatactttagagcaaattgaggaacagttggatgttgct
ctgtccaaaatctgcaagaattttgacattaaccattataccaaggttcaacaagcttat
cgacttcttggaaaaacacagacagcaatggatcaacttcatatgcacttcacccaagcc
attcataatactgtgtttcaagttgttcttggttatgtggaactatgtgcaggaaacaca
gatacaaaattccaaaagctgcaatataaggatctctgtacgcatgttacaccagacagc
tatattccatgccttgctgacctgtgcaaagcactgtgggaggttatgctcagctattac
agaactatggaatggcatgaaaagcatgacagtgaagatactacttctgcttctgaaggg
agtaatattatgggtactgaagaaacaaattttgatcgtggctacataaaaaagaaatta
gaacatggacttacacgaatatggcaggatgttcagttaaaagtaaaaacctacttgctt
ggaactgatttgtcaatattcaaatatgatgacttcatctttgttttggatataatcagc
aggttgatgcaagttggagaagaattctgtggtagcaagtctgaagttttgcaagagtct
attagaaaacaaagtgtcaattattttaagaactaccatagaacacggcttgatgaactg
agaatgtttctagaaaatgagacctgggaactttgtcctgttaagtcaaatttcagcatc
ttgcagcttcatgaatttaaattcatggaacagtcacgttccccatcagtttcacccaat
aagcagccatcctcaacttcctcaaaaatggtaaccttgtttgagcagtactgtagtggt
gggaatccatttgaaattcaggctgaccacaaagatgaagaaacagaagacgtcctggct
tctaatgggtatgaatctgatgaacaagaaaaaagtgcctatcaggagtatgacagtgac
agtgatgttcctgaggaactaaaacaagattatgttgatgagcagacaggcgatgctcct
gtgaaaagcgtttctcgagagactctaaaaagcaggaagaaatcagattacagtctaaat
aaagtgaatgcacccatcttaacaaatacaacactgaatgtaataagacttgttggtaaa
tatatgcagatgatgaacattcttaaaccaattgcttttgatgttatccatttcatgtct
cagctatttgattattacttgtatgcaatatataccttttttggtcggaatgattcattg
gaatccacgggactaggtcttagcagtagtagactaagaacaactctaaacagaatacaa
gaaagcctcattgatctggaagtttcagctgatcctactgccacgctcacagcagcagaa
gagagaaaggagaaggtaccgagccctcacctcagtcacctagtggttttgacatttggg
gatacattgtatgggttggcggaaagagtggtagccacagaatccttggtattcttggct
gaacagtttgagttccttcagccacatctggatgctgtgatgcctgcagtcaaaaaaccc
tttcttcagcagttttattctcagaccgtctcaacagccagtgaactacgcaaaccaatt
tactggattgtagctggtaaagccattgattatgaacagatgctgctcctaatggctaat
gtgaaatgggatgtaaaagaaattatgtcacagcacaacatatatgtagatgcactgtta
aaggaatttgagcagtttaacacgaggttaaatgaagtttctaagagagttcggataccc
ttgcccgtgtctaatatactttgggaacattgtatacgtctggctaatagaacaattgtg
gaaggatatgccaacgtcaagaagtgtagtaatgagggtcgtgccttgatgcaattggat
tttcaacagtttttaatgaaacttgaaaaactaacagatattagaccaattccagataaa
gaatttgtggaaacctatattaaagcgtactatctaactgagaatgacatggaacgctgg
atcaaagagcatagggagtattcgacgaagcagctgaccaatctggtaaatgtttgcctg
ggatcccatatcaataagaaagcaagacaaaagcttctctcagctatagatgatatagac
agacccaaaagataa
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