Phocoena phocoena (harbor porpoise): 136129357
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Entry
136129357 CDS
T11058
Symbol
SKIC2
Name
(RefSeq) superkiller complex protein 2
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
pphc Phocoena phocoena (harbor porpoise)
Pathway
pphc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pphc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
136129357 (SKIC2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pphc03019
]
136129357 (SKIC2)
Enzymes [BR:
pphc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
136129357 (SKIC2)
Messenger RNA biogenesis [BR:
pphc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
136129357 (SKIC2)
mRNA degradation factors
3'-5' decay
Ski complex
136129357 (SKIC2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
Ski2_N
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
DUF3516
Motif
Other DBs
NCBI-GeneID:
136129357
NCBI-ProteinID:
XP_065741658
LinkDB
All DBs
Position
10:complement(81837223..81847230)
Genome browser
AA seq
1247 aa
AA seq
DB search
MMETERIVLPPPDPLDLPLRAVELGCTGRWELLNVPGAPESTLPHGLPPCAPDLQQEAEQ
LFLSSPAWLPLHGVEHSARKWQRKMDPWSLLATLGAPVPSDLQAQRHPTTGQILGYKEVL
LENTNLSATTSLSLRRPPGPISQSLWGNPTQYPFWPGGMDEPTITDMSTREEAEEEIDFE
KDLLTVPPGFKKGVDFAPEDHPAPAPGLLSLSRLLEPLDLGGGDEDESGEAVGQPGGPRR
DTVSASPCSAPLARASSLENLVLQEASTAVAPPEPPKPPPQEQWAIPVDVTSPVDDFYRL
IPQPAFRWAFEPDVFQKQAILHLERHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYT
SPIKALSNQKFRDFRNTFGDVGLLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIRDLEW
VIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQIYVIS
TVARPVPLEHYLFTGNSPKTQGELFLLLDSRGTFHTKGYYAAVEARKERMSKHAQTFGAK
QPTHQGGPAQDRGVYLSLLASLRTRAQLPVVVFTFSRGRCDEQASGLTSLDLTTSSEKSE
IHLFLQRCLARLRGSDRQLPQVLHMSELLHRGLGVHHSGILPILKEIVEMLFSRGLVKVL
FATETFAMGVNMPARTVVFDSTRKHDGSTFRDLLPGEYVQMAGRAGRRGLDPTGTVILLC
KGRVPEMADLHRMTMGKPSQLQSQFRLTYTMILNLLRVDALRVEDMMKRSFSEFPSRKDS
KAHEQTLAELTKRLGALEEPDVTGQLADLPEYYSYGEELTETRSLIQRRIMESVNGLKSL
SAGRVVIVKSQKHHNALGVILQVSSSSTSRVFTTLVLCDKPTSEDPQERGPASPSVPYPD
DLVGFKLFLPEGPCGHTVAKLQPGDVAAITTKVLRLNGEKILEDFSKRQQPKFKKEPPSA
AATTAVQELLRLAQAHPAGPPTLDPVNDLQLKDVSVVEAGLRVRKLEELIRGAQCVHSPR
FPAQYLKLRGRMQIQEEMERLRFLLSDQSLLLLPEYHQRVEVLRTLGYVDEVGTVKLAGR
VACAMSSHELLLTELMFDNALSALRPEEIAALLSGLVCQSPGDPSDQLPSTLKQGVERVR
AVAKRIGEVQVACGLNQTVEEFVGELNFGLVEVVYEWARGMPFSELAGLSGTPEGLVVRC
IQRLAEMCRSLRGAARLVGEPVLGAKMETAATLLRRDIVFAASLYTQ
NT seq
3744 nt
NT seq
+upstream
nt +downstream
nt
atgatggagacggagcgaatcgtgctacctcccccagatcctctggacctgccccttcgg
gccgtagagctgggatgcacagggcgttgggagctgctgaatgtgcctggggctccagag
agcacccttccccacggcctccctccctgtgccccagatctgcagcaagaagcagagcag
ttgtttctgtcatctcccgcctggctgcctctgcacggtgtggaacactcagcccgaaaa
tggcagaggaagatggatccttggtctctcctggccacactgggggccccagtcccctcc
gacctacaggcccaaagacacccaaccacaggccagatactaggctacaaggaggtcctg
ctagagaatacaaacctgtcggccacgacctccttgtctcttcgccggccacccgggccc
atctcccagtccctgtgggggaatccaacacagtacccattctggccagggggaatggat
gagcccaccataacagatatgagcactcgagaggaggctgaggaggagatagactttgag
aaagatcttcttactgtcccacctggcttcaagaaaggtgtggactttgcaccagaggat
cacccggctccagctcccggcctgctcagcctcagccgtctgctggagcccctggatttg
ggtgggggcgatgaggatgagagtggtgaggcagtgggacagccaggcggtcccagacgg
gacactgtttcagcctctccctgcagtgctcccctggcccgagcaagcagcttggagaac
ctagtgttgcaggaagcgtccacagctgtagctcccccagagcctcccaagcccccccct
caggagcagtgggccattcctgtggatgtcacctcccctgtcgatgatttctaccgactc
attccccagccagccttccggtgggcgtttgagccagacgtgtttcagaaacaggccatc
ctacacttggaacggcatgactcggtctttgttgcggctcacacgtccgcagggaagacg
gttgtggctgaatacgccattgcccttgcccagaaacacatgacgcgcaccatctatact
tcgcccatcaaggctctgagcaaccagaagttccgggacttccgaaacacatttggggat
gtgggacttctcaccggggacgtgcagctgcacccagaggcctcttgcctcattatgaca
acagagatccttcgctccatgctgtacagtggctcggatgtcatccgagacctggagtgg
gtcatctttgatgaggttcactacatcaacgatgctgagcgtggagtcgtgtgggaggag
gtgctcatcatgcttcctgaccacgtctccatcatccttctgagtgctactgtccccaac
gcgcttgaatttgctgactggattgggaggctgaagcgtcgccagatctatgtgatcagc
actgttgctcgcccagtccccctggagcattatctcttcacggggaacagccccaagacc
cagggggagctcttcctgttgctggactcccgaggcaccttccacacaaaggggtactac
gcggctgtggaggccaggaaggagcggatgagcaaacacgcccagacctttggggccaag
cagcccacgcatcagggggggcctgcacaggaccgtggcgtgtacctgtccctcctagcc
tccctccgcacccgtgcgcagctgcctgtggtggtgttcaccttctcccgtggccgctgt
gatgagcaggcctcgggcctcacctcccttgacctcaccacgagttcagagaagagtgag
attcacctcttcctgcagcgctgcctcgctcgcctccgaggctctgaccgccagctgccc
caggttctgcacatgtctgaactcctgcaccgcggcctgggtgtgcaccacagcggcatc
ctgcccatcctcaaggagatcgtggagatgcttttcagccgtggcctggtcaaggtcttg
tttgccacggagaccttcgccatgggtgtaaatatgccagcccggacagtggtgtttgac
tccacgcgtaagcacgatggctccaccttccgggacctgctccctggggagtatgtgcag
atggcaggccgggcgggccggaggggcctggaccccacaggcaccgtcatcctgctctgc
aagggccgcgtgcccgagatggcggacctgcaccgcatgacgatggggaagccgtcccag
ctgcagtcccagttccgcctcacgtacaccatgatcctcaacctgctgcgggtggacgcc
ctccgggtggaggacatgatgaagaggagcttctctgagtttccatcccgcaaggacagt
aaggcccatgaacagactctggctgagctgaccaagcggctgggggccttggaggagcct
gatgtgactggccaactcgctgacctgcctgagtattacagctacggggaggaactgaca
gagacccggagcctgatccagcgacgcatcatggagtctgtgaatgggctgaaatctctc
tcagcgggaagggtggtgattgtgaagagtcagaagcatcacaacgccctgggtgtgatc
cttcaggtctcctcgagctccaccagcagagtattcacgactctggtcttgtgtgataag
cccacgtctgaggacccgcaggagagggggccagcctcccccagtgtgccctacccagat
gacctcgtgggattcaagctgttcctgcctgaagggccctgtggccacactgtggccaag
ctccagccgggagatgtggctgccatcaccaccaaggtgctccggctgaatggggagaag
atcttggaggacttcagcaagaggcagcaaccaaaattcaagaaggagcctccctctgcg
gccgcgacaactgctgtccaggaactactacgtctggctcaggcccacccagcaggaccc
cctacccttgaccctgtcaatgacctgcagctcaaggatgtgtcggtggtagaggcgggg
ctccgggtccggaagctggaggagctgatacggggggctcagtgtgtacacagtccccgt
ttccctgcccagtacctgaagctgcgggggcggatgcagatacaggaggagatggagcgg
ctgcgcttcctgctgtcggatcagtcgcttctgctgctccctgagtaccaccagcgagta
gaggtgctccgaaccctggggtacgtagatgaagtgggcaccgtgaagctggcagggcgg
gtggcttgtgccatgagcagccatgagctgctcctcactgaactcatgtttgacaacgcg
ctgagtgcccttcggcccgaggagatcgcggccctgctctccggcctggtctgccagagc
cccggggaccctagtgatcagctcccaagcacccttaaacagggggtggaacgtgtccgg
gctgtggccaagcggatcggtgaggtgcaggtggcctgtggcttgaaccagacagtggag
gaatttgtgggagagctgaattttggcctggtcgaggttgtgtacgagtgggcccggggc
atgcccttctctgagttggcagggctctcggggacccccgagggcctggtggtccgctgc
atccaacgcctggccgagatgtgtcgttcgcttcggggggcggcccgcctggtgggcgag
cctgtgctaggtgccaagatggagacggcagccaccctgctacggagggacatcgtcttt
gcagccagcctctacacccagtga
DBGET
integrated database retrieval system
