Phocoena phocoena (harbor porpoise): 136129813
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Entry
136129813 CDS
T11058
Symbol
DHX16
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
pphc Phocoena phocoena (harbor porpoise)
Pathway
pphc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pphc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
136129813 (DHX16)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pphc03041
]
136129813 (DHX16)
Enzymes [BR:
pphc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
136129813 (DHX16)
Spliceosome [BR:
pphc03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
136129813 (DHX16)
Complex C
U4/U6.U5 tri-SnRNP related factors
136129813 (DHX16)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
AAA_30
AAA_19
SecA_DEAD
SRP54
nSTAND3
Cas3-like_C_2
Flavi_DEAD
Motif
Other DBs
NCBI-GeneID:
136129813
NCBI-ProteinID:
XP_065742230
LinkDB
All DBs
Position
10:82609630..82624721
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AA seq
1045 aa
AA seq
DB search
MATPAGLERWVQDELHSVLGLSERHVAQFLIGTAQRCASAEEFVQRLRDTDTLDVSGPAR
DFALRLWTKVPRKAVVEKPARAAEREARALLEKNQSYRLLEDSEESSEETVGRAGSSLRK
KLKKRKHLRKKRQEEEEEEEEEDFSEKGKRKTQGSKQQTEKPESEDEWERTERERLQDLE
ERDAFAERVRQRDKDRTRNVLERSDKKAYEEAQKRLKMAEEDRKAMVPELRKKSRREYLA
KREREKLEDLEAELVDEEFLFGDVELSQHERRELRYKRRVRDLAREYRAAGEQEKLEATN
RYHMPEETRGQPARAVDLVEEESGAPGEEQRRWEEARLGAASLKFGARDAASQEPKYQLV
LEEEETIEFVRATQLQGDEEPSAPPVPTQAQQKESIQVVRRSLPVFPFREELLAAIASHQ
VLIIEGETGSGKTTQIPQYLFEEGYTKKGVKIACTQPRRVAAMSVAARVAREMGVKLGNE
VGYSIRFEDCTSERTVLRYMTDGMLLREFLSEPDLASYSVVMVDEAHERTLHTDILFGLI
KDVARFRPELKVLVASATLDTARFSTFFDDAPVFRIPGRRFPVDIFYTKAPEADYLEACV
VSVLQIHVTQPPGDILVFLTGQEEIEAACEMLQDRCRRLGSKIRELLVLPIYANLPSDMQ
ARIFQPTPPGARKVVVATNIAETSLTIEGIIYVLDPGFCKQKSYNPRTGMESLTVTPCSK
ASASQRAGRAGRVAAGKCFRLYTAWAYQHELEETTVPEIQRTSLGNVVLLLKSLGIHDLM
HFDFLDPPPYETLLLALEQLYALGALNHLGELTTSGRKMAELPVDPMLSKMILASEKYSC
SEEILTVAAMLSVNNSIFYRPKDKVVHADNARVNFFLPGGDHLVLLNVYTQWAESGYSSQ
WCYENFVQFRSMRRARDVREQLEGLLERVEVGLSSCQGDYIRVRKAITAGYFYHTARLTR
SGYRTVKQQQTVFIHPNSSLFEEQPRWLLYHELVLTTKEFMRQVLEIESSWLLEVAPHYY
KAKELEDPHAKKMPRKVGKTREELG
NT seq
3138 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgccggcggggctggagcgctgggtgcaagacgagctgcactcggtgctggga
ctgagcgagcggcatgtggcccagttcctcatcggtaccgcgcagcgctgcgcctcggca
gaggagttcgtgcagcgcttgagagacaccgataccctggacgtcagtgggccggcccgg
gacttcgccttgaggctctggaccaaggtcccaaggaaggctgtggtggaaaagccagct
cgggcagcagagcgagaggccagagccctgctggaaaagaaccaatcctacaggttgctg
gaggacagtgaggagagcagcgaggagactgtaggcagggccgggagcagtctccggaag
aagctgaaaaaacggaaacacctcaggaagaaacgtcaggaggaagaggaagaagaagag
gaggaagacttttctgagaaaggaaagaggaagacacaggggagtaaacagcagacggag
aagccagagtcagaggatgagtgggagcggacagagcgagagcgccttcaggacctggag
gagcgcgatgcgttcgccgagcgggttcggcagcgggacaaggaccggactcgcaacgtc
ctggagcggtcagacaagaaggcttatgaagaggctcagaagcgcctcaagatggctgag
gaagaccggaaagccatggtccctgagctgcggaagaaatcccgccgagaatacctggcc
aagcgggagcgcgagaagcttgaggacctggaggccgagctggtggacgaggagttcctc
tttggggatgtggagctgagccaacatgagcggcgcgagctcagatacaagcggcgagtg
cgggatctggcccgggagtaccgggcggctggggagcaggagaagctggaggccaccaat
cgctaccacatgcccgaggagacgcgaggacagccagcacgagcggtggatctagtggag
gaggagtccggtgcccctggggaggagcagcggcgctgggaggaggcccggcttggggca
gcgtccctgaagtttggggcccgagatgctgcctcccaggagcccaagtatcagctggtg
ctggaggaagaggagaccatcgagttcgtccgggccactcagctccagggtgatgaggag
ccgtcagccccacccgttccaacccaggcccagcagaaggagtccatccaggtcgtccgc
cgcagcctcccggtgttcccgttccgcgaggagctgctggccgccattgctagtcatcag
gtcctcatcatcgaaggcgagacaggctcgggcaagaccacccaaatcccacagtacctc
tttgaggagggttacacaaagaaaggtgtgaagattgcctgcacccagccccggagagtg
gcagccatgagtgtggctgcccgagtggcccgggagatgggtgtgaagcttgggaatgag
gtcggctacagcatccgctttgaggactgcacatcagagcgaactgtcctgcgctacatg
acggatgggatgcttctccgggagttcctctctgagcctgaccttgcgagttacagcgtg
gtgatggtggatgaggcccacgaacggaccctgcacacagacattctctttgggttgatc
aaggatgttgctcgattccgacctgagctcaaagtcctggtggcttcagccacactggac
actgcccgcttttccaccttctttgatgatgcccccgtcttccggatccctggacgcagg
tttccagttgacatcttctataccaaggccccggaggcagactacctggaggcctgcgtg
gtgtctgtgctacagattcacgtgacccagcccccgggcgacatcctggtgttcctgacg
ggacaggaggagattgaggctgcctgtgagatgctccaggatcgctgccgccgcctgggc
tccaaaatccgggagctcctggtgctgcccatttacgccaacctgccttccgatatgcag
gcgcggatcttccagcccacgccccctggggcacggaaggtagttgtggcaacgaacatc
gccgagacctcgctcaccatcgagggcatcatttacgtgctggacccggggttctgtaag
cagaagagctacaacccgcgcacgggcatggaatcgctcaccgtcacaccctgcagcaag
gcctcagccagtcagcgagctggtcgggcgggtcgggtggctgcagggaagtgcttccgc
ctgtataccgcctgggcctatcagcacgagctggaagaaaccacagtgcccgagattcag
aggaccagcctgggcaacgtcgtgttgctgctcaagagtttagggatccacgacctaatg
cactttgatttcctggaccctccgccatatgagaccctgctgctggctttggagcagctg
tacgcgctgggggccctcaaccaccttggggagctcaccacgtctggtcgaaagatggca
gagctgccggtggaccccatgctgtctaaaatgatcctggcctctgagaagtacagctgt
tcggaggagatcctgacagtggctgccatgctctctgtcaacaactccatcttctaccga
cccaaggacaaggtcgtccatgccgacaatgctcgtgtcaacttcttcctccctggtggg
gaccacctggttctgctgaacgtttatacacagtgggctgagagtggttactcttcccag
tggtgctatgagaactttgtacagttcagatcgatgcgccgagcccgggatgtgcgggaa
cagctggaggggctcctggaacgcgtggaagtcggtctcagttcctgccagggggactat
atccgtgtccgaaaggccatcactgctggttacttttaccacacagcacggttgactcgc
agcggctaccgcacggtgaaacagcagcagacggtgttcattcatcccaactcttccctc
tttgaggaacagccacgctggttgctctaccacgaacttgtcttgaccaccaaagagttc
atgagacaggtattggagattgagagcagttggcttctggaggtggctccccactattac
aaggccaaggagctagaagatccccatgctaagaaaatgcccagaaaagtaggcaagaca
cgagaggagctagggtaa
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