Phocoena phocoena (harbor porpoise): 136129871
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Entry
136129871 CDS
T11058
Symbol
LIMD1
Name
(RefSeq) LIM domain-containing protein 1
KO
K16682
LIM domain-containing protein
Organism
pphc Phocoena phocoena (harbor porpoise)
Pathway
pphc04390
Hippo signaling pathway
pphc04392
Hippo signaling pathway - multiple species
Brite
KEGG Orthology (KO) [BR:
pphc00001
]
09130 Environmental Information Processing
09132 Signal transduction
04390 Hippo signaling pathway
136129871 (LIMD1)
04392 Hippo signaling pathway - multiple species
136129871 (LIMD1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pphc03019
]
136129871 (LIMD1)
03036 Chromosome and associated proteins [BR:
pphc03036
]
136129871 (LIMD1)
Messenger RNA biogenesis [BR:
pphc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
136129871 (LIMD1)
Chromosome and associated proteins [BR:
pphc03036
]
Eukaryotic type
Sister chromatid separation proteins
Aurora kinases
Regulators of Aurora kinases
136129871 (LIMD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LIM
zf-ChsH2
Motif
Other DBs
NCBI-GeneID:
136129871
NCBI-ProteinID:
XP_065742290
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Position
10:complement(41750260..41819336)
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AA seq
669 aa
AA seq
DB search
MDKYDDLGLEASKFIEDLNMYEASKDGLFRVDKGASNNPEFEETRRVFATKMAKIHLHQP
HQLLQEETLPRGSRGPVNGGGRLGPQAHREADGGSKVMGDGAAKPPLAASTVAPGTATTI
AAGQPLSPPQEQRAKLCVRGARQGSQDCGSKESVASSEMSAFHRPGPCEDPSCLTHGDYY
DNLFLASPNWGDEPAVSPSIRLGVGSGWSGMPGSGPPLSTPSRVHHLYQQQLSPSSSRSL
QSSQDGGVGGHSSEKPAALWTTASSQRVSPGLSSPGPENGALPRPAQPRTPSFSAPLALN
RSGQGPLPRTNSGVGSEVSGMMPKPTVDPQPWFQDGPKSYLSSSAPSSSPASMDNMQLGA
VPGPGPKPGCTDPGVGPKLSLVHPVMSTLPELSCKESPSGWSSDGNLGPVLPESPGSPRV
RLPCQTLIPGPELGPTAAELKLEALTQRLEREMDAHPKADYFGACVKCSKGVFGAGQACQ
AMGNLYHDACFTCAACSRKLRGKAFYFVNGKVFCEEDFLYSGFQQSADRCFLCGHLIMDM
ILQALGKSYHPGCFRCVICNECLDGVPFTVDSENKIYCVRDYHKVLAPKCAACGLPILPP
EGSDETIRVVSMDRDYHVECYHCEDCGLELNDEDGHRCYPLEDHLFCHSCHIKRLEKGHS
STALHQHHF
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atggataagtatgacgacctgggcctggaggccagtaaattcattgaggacctgaacatg
tatgaggcctccaaggatggactcttccgagtggacaagggtgcaagcaacaacccggag
tttgaggaaacacgcagggtgtttgccaccaagatggccaaaatccacctgcaccagccg
caccagctcctgcaggaggagaccctgcccaggggcagccgaggtcccgtgaacggtggg
ggccgcctgggcccacaggcccaccgggaagctgatggaggcagcaaggtgatgggggat
ggcgctgcgaagcctcctctcgctgcctcgacagtggcccctgggacagccacaaccatt
gcagctgggcagcccttgtccccaccccaggaacagagggccaagctgtgtgtccgtggc
gcaaggcaaggcagccaggactgtggatccaaggagagcgtggcgagttctgagatgtct
gctttccatcggccgggcccctgtgaggatccttcctgcctcacccacggagactattat
gacaacctctttttggcaagccccaactggggagatgaaccagctgtgtcccccagcatc
agactgggtgtaggaagtgggtggtctggcatgccagggagtggcccgccactgtccaca
ccctccagggtccatcacctataccagcagcagctttccccgagctccagcaggtcattg
cagagcagccaggatggtggtgttggtggccacagcagtgagaagccagctgctctttgg
accaccgcctcctcccagcgagtgagccctggcctctcttccccaggcccagagaacggg
gccctaccgagacctgctcagcccaggaccccttctttctcagcgcccctggccctgaac
cgctccggtcagggacctcttccaagaacaaactcgggggtagggagtgaggtttcaggc
atgatgcccaaacctactgtggaccctcaaccctggttccaggatggccccaaatcttac
ctttctagctctgccccttcatcctcgccagccagcatggacaatatgcagctgggtgca
gtccctgggccgggtcccaagcctggctgtacagaccctggcgttggtcccaagctcagc
cttgtccatccagtgatgtctaccttgcccgagttatcttgtaaagaaagtccctctggc
tggtcctctgatggcaacctggggcctgtgctcccagagagccccggttcccccagggtg
aggctgccttgccagaccctcatcccgggccctgagcttggacccacggctgccgaattg
aagttagaagccctcacccaacgtctggagcgtgagatggatgctcacccgaaggccgat
tactttggagcctgtgtgaaatgcagcaagggggtgtttggggccggccaggcctgccag
gccatggggaacctctaccacgacgcgtgcttcacctgtgcggcctgcagccggaagctg
agaggaaaagccttttattttgtcaacggcaaagtgttttgtgaggaagacttcctgtac
tctggtttccagcagtctgctgacaggtgttttctttgtggacatctgatcatggacatg
atccttcaggccctggggaagtcctaccaccccggctgcttccgctgtgttatctgtaat
gagtgtttggacggggtacccttcactgtggactcagagaacaagatctactgtgtccgg
gattaccacaaggtgttggcccccaagtgtgcagcctgtggccttcccatccttccacct
gagggctcagatgagaccatccgagtcgtgtccatggacagagactaccacgtggagtgt
taccactgtgaggactgcggtctggagctcaatgatgaagatggtcaccgctgctacccc
ctggaggaccacctgttctgtcactcctgccacatcaagaggctggagaagggtcactca
tccacagcccttcaccagcaccacttctag
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