Phocoena phocoena (harbor porpoise): 136130041
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Entry
136130041 CDS
T11058
Symbol
SCN11A
Name
(RefSeq) sodium channel protein type 11 subunit alpha
KO
K04843
voltage-gated sodium channel type XI alpha
Organism
pphc Phocoena phocoena (harbor porpoise)
Brite
KEGG Orthology (KO) [BR:
pphc00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
pphc04040
]
136130041 (SCN11A)
Ion channels [BR:
pphc04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
136130041 (SCN11A)
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
IQ_SCN5A_C
PKD_channel
GPHH
Motif
Other DBs
NCBI-GeneID:
136130041
NCBI-ProteinID:
XP_065742510
LinkDB
All DBs
Position
10:complement(43385217..43453415)
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AA seq
1782 aa
AA seq
DB search
MDDRCYPVIFPDARNFRPFTPDSLAAIKKRIAIQKEKKKSKDQTAAEPQPRPQLDLKVSR
KLPMLYGDIPHELIGKPLEDLDPFYRNHKTFMVLNKKRTIYRFSAKRALFIFGPFNSIRS
LAIRISVHSLFSMFIICTVIINCVFMAMTRGKDSVNVDTESAEYIFTGIYIFEALVKILA
RGFILDEFSFLRDPWNWLDSIVIATAFVSYSPYIKDSSISLSSLRTFRVFRALKAISVIS
GLKVIVGALLRSVKRLVDVMILTLFCLSIFTLVGQQLFMGNLNQKCVRKDCGSDYKDDCF
EKKDSTEFRICGTWMESGACSEQFECKHTNKNPDYNYTNFDSFGWSFLAVFRLMTQDSWE
KLYQQTLRTSGLYSVFFFVVVIFLGSFYLINLTLAVVTMAYEEQNKNVAAETEAKEKMFQ
EAQQLLKEEKEALVAMGIDRSSLNSLEASSFSLKKRKLFGNKKGKSFFLRKSGKDQVPGL
DSDEDSSKKPHLLEQTKRLSQNLSVDHCDEHRDPFQRQRALSAVSILTITMHEQEKSQEP
CLPCGENLASKYLVWDCSPRWLCIKKALRTMMTDPFTELAITICIIINTLFLAMEHYKMD
QSFENMLYTGNLVFTGIFMAEMCLKIIALDPYHYFRGGWNIFDSIVALLSFAEVIINSMC
PGKQSCMSLRSLRVLRVFKLAKSWPTLNTLLKIIGHSVGALGNLTVVLAIVVFIFSVVGM
QLFGSKFNCIKSNSKSHDPAVPCLRRWHMGDFYHSFLVVFRILCGEWIENMWECMQEANQ
ALCIIVFLLIMVIGKLVVLNLFIALLLNSFSNEERDGHLEGEVRKTKVQLALDRFCRAFC
FVIYTLEHFCTKWCRRQHLPKEKEVTEGPEAESKGVIPLVIEMRKGPETWEEFGVLTSAP
KTLSVGHDRTWLAPLAEEEDDAESPGEDKAQPITQPEPGKQASELHQKAKEPTSPGAQIV
EMDIFSEGDPYLSVQNPRKKSDATSVLSECSTTGPQDPFRRVLEMVPKKEPERCLPKGLN
YCSPCCTMDKRKSPWIIWWNLRKTCYQIVKHSWFESFIIFVILLSSGALVFEDIYLGTQP
KIQTILNCTDSIFTYIFILEMGLKWVAFGFRKYFTSAWCWLDFIIVIVSVTSLIDLKVLK
SFRILRALRPLRALSQFEGMKVVVNALIGAIPAILNVLLVCLIFWLIFCILGVSLFSGKF
GRCVNVTDGNSVINYNIVANRSQCESGNFSWFTLKVNFDNVGMAYLALLQVATFKGWMDI
MYAAVDSRGEGQQPRFEENSLMYVYFVVFIIFGSFFTLNLFIGVIIDNFNQQQKKISGQD
IFLTEEQKKYYNAMKKLGSKKPQRPIPRPLNKCQGFVFDLVTHQVFDIVIIILIFLNMVS
MMAESYGQSKAMELFLERLNLAFVVVFTTECLIKIFALRQYYFTSGWNLFDCVIVVISIV
STVVSALKTQAHIPFPPTFFRIVRLARIGRILRLVRAARGIRTLLFALMMSLPSLFNIGL
LLFLVMFIYAIFGMNCFCKVKEESGIDDIFNFKTFKGSMLCLFQITTSAGWDALLSPMLQ
SKDSCNPKSENCYLSAIAITYFVSYIIISFLIVVNMYIAVILENFNIATEESEDPLGEDD
FEIFYEVWEKFDPEATQFIEYSALSDFADALPEPLRVAKPNKYQFLVMDLPMVSGDRLHC
LDILFAFTARVLGESSGLDSMKAVMEEKFMEANPFKKLYEPIVTTTKRKEEERCAAVIQK
AFRKYMTKTKCTLEDRPHSPLQTLCNGDLSSSGVAEGKVHYD
NT seq
5349 nt
NT seq
+upstream
nt +downstream
nt
atggatgacaggtgctacccggtgatcttcccagatgcgaggaatttccgccccttcact
cctgactctttggctgcaatcaagaagcggatcgccatccaaaaggagaaaaaaaagtcc
aaagaccagacagcagcagaaccccagcctcgacctcagcttgacctaaaggtgtccaga
aagttgcccatgctctatggtgacattccccatgagctgatagggaagcccctggaagac
ttggacccattctacagaaatcataagacatttatggtgttgaacaaaaagagaacaatc
taccgcttcagtgccaaacgtgccttgttcatttttgggcctttcaattcaatcagaagt
ttagccattagaatttcagtccattcattgttcagcatgttcatcatctgcaccgtcatc
atcaactgcgtgttcatggccatgactcgtgggaaggacagcgttaacgtagatactgag
agtgcggagtatatcttcactgggatttatatatttgaagcattagttaaaatattggca
agaggttttattctggatgagttttctttccttcgagatccgtggaactggctggactcc
attgtcattgcaacagcgtttgtatcatattcaccatatatcaaggacagcagcatcagt
ctgtcatccctgcgtaccttccgagtgttcagagctttgaaagcaatttcagtaatttca
ggtctgaaggtcattgttggggccttgctgcgctctgtgaagaggcttgtcgatgtgatg
atcctgactctcttttgcctcagcatcttcaccctggtaggtcagcagctcttcatggga
aatctgaaccagaaatgtgtgaggaaagactgtggctctgactataaagacgattgcttt
gaaaagaaagattccactgaattcagaatatgtggcacatggatggagagcggggcttgt
tctgaacaatttgaatgcaaacataccaataaaaatcctgactataattacacgaatttt
gacagctttggctggtcttttcttgccgtgttccggcttatgacccaagattcctgggag
aagctttatcaacagactttgcgcacctcagggctctactcagtcttcttctttgtggtg
gtcatcttcctgggctctttctacttgattaacttaaccctggctgttgtcaccatggct
tacgaggaacagaacaagaatgtagctgctgagacagaagccaaggagaagatgttccag
gaagcccagcagctgttaaaggaggagaaggaggctctggttgccatgggtattgacaga
agttcacttaattcccttgaagcatcatctttttccctgaagaagagaaagctatttggt
aataagaaaggaaaatccttctttttgagaaagtctgggaaagaccaggttccaggatta
gattctgatgaagattcttcaaaaaagccacacctacttgaacaaaccaaacgactgtcc
cagaatctgtcagtggaccactgtgatgagcacagagaccccttccaaaggcagagagca
ctgagcgctgtgagcatcctcaccatcaccatgcacgaacaagaaaaatcacaggaacct
tgcctcccatgtggggaaaacctggcatccaaatacctcgtgtgggactgtagcccccgg
tggctgtgcattaagaaggccctgagaaccatgatgactgacccctttactgagctggcc
atcaccatctgcatcataatcaacactctcttcttggccatggagcattacaaaatggac
cagagttttgagaacatgttgtacacagggaatttggttttcactggcattttcatggct
gaaatgtgcctaaaaatcattgcgctggatccctaccactactttcgtggaggctggaac
atttttgacagcattgttgctcttctgagttttgcagaggtgataataaacagtatgtgt
ccaggaaaacaaagttgtatgtcacttcgttccttaagagtgctgagggtcttcaagtta
gccaaatcctggccaactttaaacacactgcttaagataattggccattccgttggagcc
cttggaaacctgactgtggtcttggccattgtggtctttattttctcagtagttggcatg
cagctttttggctctaaattcaattgcataaagagtaattcaaagtcccatgaccctgca
gtcccatgtttacgacgctggcacatgggggatttctaccactcctttctggtggtattc
cgcatcctctgtggggaatggatcgaaaacatgtgggaatgtatgcaagaagctaaccaa
gcactgtgcattattgtgtttctgttgatcatggtgataggaaaactcgtggtactcaac
ctcttcattgccttgctgctcaattccttcagcaatgaggagagagatggacacttggaa
ggagaggtcaggaaaaccaaagtccagttagccctggaccggttctgccgggcgttttgt
tttgtcatatatactcttgagcatttttgtaccaagtggtgcaggagacaacatttacca
aaggaaaaagaggtgacagaaggccctgaggcagagagcaaaggtgtcattcccctggtc
atagagatgagaaagggcccagagacctgggaggagtttggtgtactgacttccgcacca
aagaccttgagtgtcgggcatgatcggacttggttggccccactagcagaggaagaagat
gatgctgaatcccctggtgaagataaggcacagcctatcacacaacctgagcctggaaaa
caggccagtgaactccatcagaaggccaaggagcccaccagtccaggagctcagattgtg
gaaatggacatattctctgaaggtgatccttatctgtcggtacagaatccccgaaagaag
tctgatgctacaagtgtgctctcagaatgtagcaccactggtccacaggatccctttagg
cgggtacttgaaatggttcccaaaaaggaaccagagagatgtttgcccaaaggcctgaat
tactgttctccatgctgtactatggacaagaggaagtccccctggatcatttggtggaac
ctgcggaaaacctgctaccaaatagtgaaacacagctggtttgagagctttattatcttt
gtgattctgctgagcagtggggcactggtatttgaagatatttaccttggtacacaaccc
aaaatccaaacaatacttaattgtactgacagtattttcacatacatttttatcttggag
atgggtctgaaatgggtggcctttggatttaggaagtatttcaccagtgcctggtgctgg
ctcgatttcatcattgtgattgtctctgtgaccagtctcatcgacttaaaggtcttgaag
tccttccggattctgcgagcgctgaggcctctgcgagcgctgtcccagtttgaaggaatg
aaggtggtagttaacgctctcataggtgccatacctgccatcctgaatgttttgcttgtc
tgcctcattttctggctcatattttgtatcctgggagtaagtttgttttctggaaaattt
ggaagatgcgttaacgtaacagatggaaactcagttataaattacaacattgttgcaaac
cggagtcaatgtgaaagtggaaatttctcctggttcaccctgaaagtcaactttgacaat
gtgggaatggcttacctcgcgctgctgcaagtggcaacatttaagggctggatggatatt
atgtatgcagctgttgattccagaggggaaggacaacagccaaggtttgaggagaactca
ttaatgtatgtttacttcgtagtttttatcatctttggctcattcttcactctgaatctc
tttattggtgttattattgacaacttcaaccaacagcagaaaaagataagtggccaagac
atctttctgacagaagaacagaagaaatactataatgcaatgaaaaaattaggatccaaa
aaacctcaaaggcccatcccaaggcctctgaacaaatgccagggttttgtttttgaccta
gttacacaccaggtctttgacatcgtcatcatcatcctcattttcctcaacatggttagc
atgatggctgaatcatatggccagtccaaagccatggaactcttccttgagcgtctcaac
ctggcctttgtggtcgtctttacaactgagtgtctcatcaaaatctttgctttgaggcaa
tactacttcaccagtggctggaatttatttgattgtgtgatcgtggtcatttctattgtt
agtacagttgtttctgccttgaaaacccaggcacacattcctttccctccaacattcttc
agaattgtccgcttggctcggattggccgaatcctgagacttgttcgggcagcacgagga
atcagaactctccttttcgcgctaatgatgtctcttccctctctattcaacattggtctt
ctactctttctagttatgtttatttatgccatttttggtatgaactgtttttgcaaagtg
aaggaagagtctggaattgatgacatattcaacttcaaaactttcaaaggcagcatgctc
tgcctcttccagataaccacgtcagcaggctgggatgccctcctcagccccatgttgcaa
tcaaaagactcatgtaaccccaagtcagagaactgttacctctctgccatagccataacc
tacttcgtcagttatatcatcatctcctttctcatcgtggtcaacatgtatattgctgtg
attttagaaaacttcaatatagccactgaagaaagtgaggaccctttgggtgaagacgac
tttgaaatattctacgaagtctgggaaaagtttgacccggaagcaacacaatttatcgaa
tattctgctctttctgactttgctgatgcccttcctgagcctctgcgtgtggcaaagcca
aataaataccaatttttagtcatggacttgcccatggtgagcggagatcgccttcattgc
ctggatattctgttcgctttcaccgctagggtacttggtgagtccagtggcctggatagc
atgaaagcagtgatggaggagaagttcatggaagccaaccctttcaagaagttatatgaa
cccatagtcaccaccaccaagaggaaggaagaggaaagatgtgctgctgttattcaaaag
gcctttcgaaagtacatgacgaagaccaagtgtaccttggaagacaggcctcattcaccc
ctccagacactctgcaatggagacttgtccagctctggggtggccgagggcaaggtccac
tatgactga
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