Phocoena phocoena (harbor porpoise): 136130432
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Entry
136130432 CDS
T11058
Symbol
RTCB
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
pphc Phocoena phocoena (harbor porpoise)
Brite
KEGG Orthology (KO) [BR:
pphc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pphc03016
]
136130432 (RTCB)
Enzymes [BR:
pphc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
136130432 (RTCB)
Transfer RNA biogenesis [BR:
pphc03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
136130432 (RTCB)
Prokaryotic type
tRNA splicing ligases
136130432 (RTCB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
136130432
NCBI-ProteinID:
XP_065742833
LinkDB
All DBs
Position
11:14810902..14831090
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AA seq
505 aa
AA seq
DB search
MSRSYNDELQFLEKVNKSCWRIKKGFVPNMQVEGVFYVNDALEKLMFEELRNACRGGGVG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPEAVVSPGGVGFDI
NCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPSKVSARAKKRGLPQLGTLGAGNHYAEIQVVDEIFNE
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIAS
AEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQ
HVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHDAGISKKAIKLTPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagccgcagttataacgatgaactgcagttcttggaaaaggtcaataaaagctgctgg
agaatcaagaagggcttcgtgcccaacatgcaggttgaaggagttttctatgtgaatgat
gctctggaaaaattaatgtttgaagaattaaggaatgcctgtcgaggtggtggtgttggt
ggcttcctgccagccatgaaacaaattggcaatgtggccgccctgcctgggattgttcat
cgatccattgggcttcctgatgtccattcaggttatgggtttgctattgggaatatggca
gcttttgatatgaatgaccctgaagcagtggtatccccaggtggcgtcggatttgacatc
aactgtggtgtccgcttgctaagaaccaatttagacgaaagtgatgtccagcctgtgaag
gagcaacttgcccaagctatgttcgaccacattcctgttggggtggggtcgaaaggcgtc
atcccaatgaatgccaaagacttggaggaggccttggagatgggtgtggactggtcccta
agggaaggctatgcctgggctgaagacaaggagcactgcgaggagtacggaaggatgctg
caagccgaccccagtaaggtctctgccagggccaaaaagagaggccttccccagttgggg
actctgggagcaggcaaccactatgcagaaatccaggttgtggatgagattttcaatgag
tatgctgctaagaaaatgggcatcgaccataagggacaggtgtgtgtgatgatccacagt
ggaagcagaggcttgggccaccaagtagccacagatgcactggtagctatggaaaaagcc
atgaagagagacaagattatagtcaatgaccgtcagttggcttgtgctcgaatcgcttcc
gcagagggtcaggactacctgaagggaatggcagcggctgggaactatgcctgggtcaac
cgctcttccatgaccttcttaacccgtcaggcttttgccaaggtcttcaacacaacccct
gatgacttggacctacatgtgatctatgatgtttctcacaatattgccaaagtagaacag
catgtggtggatggaaaggaacggactctgttagtacacaggaagggatccacccgagct
ttccctcctcaccatccccttattgcggttgattaccaactcactggacaacctgtgctc
attggcggcaccatgggaacctgtagctatgttctcactggcactgagcagggcatgacc
gagacctttggaacaacttgtcatggagcgggccgtgcactgtcccgagcaaagtcaagg
cgtaatttagatttccaggacgtcctagacaaattggcagacatgggaattgcaatccgt
gttgcctcacccaagctggttatggaagaggcacctgagtcttataagaatgtgactgat
gtggtgaacacctgccatgatgccggaatcagcaagaaggccattaaactgacaccgatt
gctgttatcaaaggatag
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